Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01508 ATGGGACGAATCAGCCTTCTGCTTGCAGATTTCGTTCTGTCTTTCATGTGGGTATGCTCCGGTGTTCTTCTTCGCGTCATCGTCTTCAAACATCTTGGCTTCGGTCACTCACCCCTCGCTGAGGTTATCAAAACCACTTTCTCCGTCGCCAACATGTTCTTCTTCGCCTTCCTTGTCAAGATTTCGCGTGGCGGCGCCTACAACCCCCTCACCGTTTTGGCTGATTCTATCACTGGCAATTTTAACAACTTCCTCTACTGCGTTGGTGCTAGAATCCCCGCGCAGGTGGTTGGAAGTATTGTTGGCGTTAAATTTCTCATTGATACCATTCCTGAAGTGGGACAGGGACCACGTTTGAACGTTGACATTCATCAGGGTGCACTCACAGAAGGATTACTAACATTTGCAATTGTAACCATTTCACTTGGACTTGCCACAACAATCCGCGAAAATTTCTTCATGAAGACTTGGATTTCCAGCCTCACCAAATTAACACTTCATATTCTTGGTTCTGACCTCACTGGTGGTTGTATGAACCCTGCATCAGTAATGGGATGGGCTTATGCTCGTGGGGATCACATAACAAAGGAGCACTTCTTTGTATACTGGCTTGCTCCCATAGAGGCAACTATTTTAGCAGTGTGGACATTCAAATTGCTGGTGCAACCTGCAAAAGAAGATAACACAACCAAAAAAAATAAATCTGATTGA 711 0.4529 MGRISLLLADFVLSFMWVCSGVLLRVIVFKHLGFGHSPLAEVIKTTFSVANMFFFAFLVKISRGGAYNPLTVLADSITGNFNNFLYCVGARIPAQVVGSIVGVKFLIDTIPEVGQGPRLNVDIHQGALTEGLLTFAIVTISLGLATTIRENFFMKTWISSLTKLTLHILGSDLTGGCMNPASVMGWAYARGDHITKEHFFVYWLAPIEATILAVWTFKLLVQPAKEDNTTKKNKSD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01508 236 PRINTS Major intrinsic protein family signature 200 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g01508 236 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g01508 236 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g01508 236 PRINTS Major intrinsic protein family signature 129 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g01508 236 PRINTS Major intrinsic protein family signature 160 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g01508 236 Pfam Major intrinsic protein 7 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g01508 236 SUPERFAMILY Aquaporin-like 6 233 IPR023271 -
Viun1g01508 236 PANTHER AQUAPORIN SIP2-1-RELATED 1 236 IPR044226 GO:0015267
Viun1g01508 236 Gene3D Glycerol uptake facilitator protein. 3 236 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01508 Viun-Chr1 26639909 26642183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01508 1 236 Major Intrinsic Protein MIP AT3G56950 57.806 6.57e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01508 K09875 - gmx:100786138 419.083