Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01497 ATGGGGAAGAAGCGAAAGGTAGCACCCAAATCTTCTCAATCCGTTGAACCTCCGCTCAAGCATCACCAACCTGAACCCCAAATTGCGCCACCCGAGTACGAGGAAGTCGAGGAGGAAGAAGAGGAGGAAGAAGAAGTAGAAGAGGAAGTAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGACGATGAAGAGCAACAACAGCAACAAGACGAGGACGACGACCCGATCGAGAAGCTTCTGGAACCTCTAAGCAAGGATCAGATCTTAAATCTTCTGTGCGAGGCGGCGGCGAATCACCGCGACGTGGCGGACCGGATCCGCAAGGCGGCTGACGAGGATCCCGTGCACCGGAAGATCTTTGTGCACGGGTTGGGGTGGGACACTACCGCGGGAACCCTAATCAGCGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTTTCCGGCAAGTCCAAAGGTTACGGCTTCATCCTCTTCAAGACGCGGCGCGGCGCGCGCAACGCGCTAAAGCAGCCCCAGAAGAAGATCGGCAATCGCATGACAGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGTAGCAGCCAGAGCCTGCCGCAGGCATTGCCTTCCTCGGTGCCGACGCTGTCATCATCGGCTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACGTCGGTGCGGAACTCGATCCGCAGAAGCTTCTGGCGTTCTTTTCACGGTTCGGGGAAATTGAGGAGGGGCCTTTGGGACTGGATAAGCTAACCGGTAAACCGAAAGGGTTTTGTTTGTTTGTTTACAGGAGTCCGGAGAGTGCAAAGAGAGCCTTGGAAGAGCCTCATAAGGACTTTGAGGGGCATATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGCCTGGGAAGTTGCAACAACAGCAACACGGGAACGTGAATGCTCAGGTCCAGCGGACCCAGTTCCAGAGGAATGATACTGCCAATGCAGGTGGTGCGTATGTTGGTAGTGCTGCAGCAGCGCAGCCGGGACACTTGATGGCTCCAGCTGGGCCAGGGATTGGGTTTAACCAAGCGGCGTTGAATCCGGCGTTGGGGCAGGCGTTGACGGCCCTCCTGGCGTCGCAAGGGACGTTGGGGCTGACGAATTTGCTGGGGAGCATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTGCAGGGGCTGGAGTACAGAGTGGTTACAGTGCTCAGTCAAATATTAGTCCGGGTGTTATCGGAGGATATGGGACCCAGGTGGGATTGCAGGCTGCATATCCGAATCCGAATCAGCAGATAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTGGTGGTGGTGCGCCTTACATGGGGCATTAG 1398 0.5687 MGKKRKVAPKSSQSVEPPLKHHQPEPQIAPPEYEEVEEEEEEEEEVEEEVEEEEEEEEEEEEDDEEQQQQQDEDDDPIEKLLEPLSKDQILNLLCEAAANHRDVADRIRKAADEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSSSQSLPQALPSSVPTLSSSASEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSPESAKRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQHGNVNAQVQRTQFQRNDTANAGGAYVGSAAAAQPGHLMAPAGPGIGFNQAALNPALGQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPAAGAGVQSGYSAQSNISPGVIGGYGTQVGLQAAYPNPNQQIGQGGSGRGQYGGGGAPYMGH 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01497 465 MobiDBLite consensus disorder prediction 442 465 - -
Viun1g01497 465 Coils Coil 33 75 - -
Viun1g01497 465 Gene3D - 214 334 IPR012677 -
Viun1g01497 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Viun1g01497 465 Gene3D - 30 203 IPR012677 -
Viun1g01497 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Viun1g01497 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 295 IPR000504 GO:0003723
Viun1g01497 465 MobiDBLite consensus disorder prediction 31 75 - -
Viun1g01497 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 315 IPR000504 GO:0003723
Viun1g01497 465 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 314 - -
Viun1g01497 465 SMART rrm1_1 227 299 IPR000504 GO:0003723
Viun1g01497 465 SMART rrm1_1 120 192 IPR000504 GO:0003723
Viun1g01497 465 FunFam UBP1-associated protein 2A 112 196 - -
Viun1g01497 465 SUPERFAMILY RNA-binding domain, RBD 208 321 IPR035979 GO:0003676
Viun1g01497 465 MobiDBLite consensus disorder prediction 1 75 - -
Viun1g01497 465 SUPERFAMILY RNA-binding domain, RBD 118 198 IPR035979 GO:0003676
Viun1g01497 465 FunFam UBP1-associated protein 2A 212 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01497 Viun-Chr1 26572025 26578281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01497 216 402 C2H2 Transcription Factor Family AT2G19380 26.396 2.68e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01497 K12741 - gmx:100784200 647.506