Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01493 ATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGTGGGAGCAACCCCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTATTTACCTGAATCACCAGCTGATGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCCCCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACTTTAACAACCTCCGAAACACTTCCTTCATCGCATGATAAGCAAACTCATCCACACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCTCCTCGTAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGAAAGACTGAACAAAAGAATGAGTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAACAAACATAAGGAGAGTGGACAGTAA 660 0.4212 MTVLWMPLHNLVDQIVGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPSSHDKQTHPHSEASGSSDALASTLSPRKKQRIDDGSKDGFTASHVRKTEQKNECNVGQLDPNLYDDAGFGFDLETNKHKESGQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01493 219 Coils Coil 81 101 - -
Viun1g01493 219 MobiDBLite consensus disorder prediction 130 219 - -
Viun1g01493 219 MobiDBLite consensus disorder prediction 52 80 - -
Viun1g01493 219 MobiDBLite consensus disorder prediction 52 67 - -
Viun1g01493 219 Pfam MYB-CC type transfactor, LHEQLE motif 78 124 IPR025756 -
Viun1g01493 219 Gene3D - 8 50 - -
Viun1g01493 219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 47 IPR006447 GO:0003677
Viun1g01493 219 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 174 IPR044848 GO:0003700
Viun1g01493 219 MobiDBLite consensus disorder prediction 163 189 - -
Viun1g01493 219 SUPERFAMILY Homeodomain-like 18 46 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01493 Viun-Chr1 26546334 26550272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01493 27 196 G2-like Transcription Factor Family AT2G01060 51.462 5.43e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g01493 Myb_CC_LHEQLE 6.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01493 - - gmx:100787389 355.91