Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01492 ATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGTGGGAGCAACCCCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTATTTACCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCCCCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACTTTAACAACCTCCGAAACACTTCCTTCATCGCATGATAAGCAAACTCATCCACACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCTCCTCGTAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGAAAGACTGAACAAAAGAATGAGTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAACAAACATAAGGAGAGTGGACAGTAA 666 0.4204 MTVLWMPLHNLVDQIVGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPSSHDKQTHPHSEASGSSDALASTLSPRKKQRIDDGSKDGFTASHVRKTEQKNECNVGQLDPNLYDDAGFGFDLETNKHKESGQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01492 221 Coils Coil 83 103 - -
Viun1g01492 221 MobiDBLite consensus disorder prediction 132 221 - -
Viun1g01492 221 Pfam MYB-CC type transfactor, LHEQLE motif 80 126 IPR025756 -
Viun1g01492 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 47 IPR006447 GO:0003677
Viun1g01492 221 MobiDBLite consensus disorder prediction 52 69 - -
Viun1g01492 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 176 IPR044848 GO:0003700
Viun1g01492 221 Gene3D - 8 50 - -
Viun1g01492 221 MobiDBLite consensus disorder prediction 52 82 - -
Viun1g01492 221 MobiDBLite consensus disorder prediction 165 191 - -
Viun1g01492 221 SUPERFAMILY Homeodomain-like 18 46 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01492 Viun-Chr1 26546334 26550272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01492 27 198 G2-like Transcription Factor Family AT2G01060 52.023 6.61e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g01492 Myb_CC_LHEQLE 6.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01492 - - gmx:100787389 350.903