Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01453 ATGTTCTTTCACTGTACTTTCTTCCTCCGCCGCTACACGCGCTTCTCCGCCTTCTTTGTCCTCGCCTCCGTGGCCGGATCCATCCTCGTCTCCCTACTCCAGCGCTTCTCCACCCCCCTCGATGCGGATGTGACAGTTACTAAAGGAAATGAATTTGAGGATTACTATTTGAAGCGTGAGCTGCTTATGGGAATATACGAGAAGGGTTTTGAGAGGCCATCTCCTATCCAAAAAGAAAGCATTCCCATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAATAAAGGAACAGACAAAATAGCTGCATTTTGCATTCCTGGATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTAATATTGGTCCCAACTACAGAGCTGGCTTTGCAAACATCCCAAGTGTGTAGAGAACTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGTTACCAGCCTGACACATGATATTATGCGTTTATATCAACCAGTTCATCTGCTAGTTGGAACTCCAGGAAGAGTATTAGATCTTGTAAAGAAGGGTGTTTGCATTCTGAAATATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGTGTTCCAACCTTCAATAGAACAGCTTATTCAATTTCTTCCTGAAAGCCGTCAAATTCTGATGTTTTCTGCTACATTTCCTGTTAATGTTAAGGACTTCAAAGATAGATATCTACGCAAGCCATACGTTATTAACATTACGGATGAGCTAACTCTGAAAGGTTGA 786 0.4148 MFFHCTFFLRRYTRFSAFFVLASVAGSILVSLLQRFSTPLDADVTVTKGNEFEDYYLKRELLMGIYEKGFERPSPIQKESIPIALTGSDILARANKGTDKIAAFCIPGLEKIDQDNNVIQVVILVPTTELALQTSQVCRELGKHLKIQVMVTTGVTSLTHDIMRLYQPVHLLVGTPGRVLDLVKKGVCILKYCSMLVMDEADKLLSPVFQPSIEQLIQFLPESRQILMFSATFPVNVKDFKDRYLRKPYVINITDELTLKG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01453 261 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 50 78 IPR014014 GO:0003724
Viun1g01453 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 252 IPR027417 -
Viun1g01453 261 Pfam DEAD/DEAH box helicase 75 239 IPR011545 GO:0003676|GO:0005524
Viun1g01453 261 SMART ultradead3 69 260 IPR014001 -
Viun1g01453 261 CDD DEADc_DDX6 52 252 - -
Viun1g01453 261 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 197 205 IPR000629 -
Viun1g01453 261 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 251 IPR014001 -
Viun1g01453 261 Gene3D - 50 255 IPR027417 -
Viun1g01453 261 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 39 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01453 Viun-Chr1 25985918 25988922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01453 52 261 Eukaryotic Initiation Factors Gene Family AT3G19760 35.545 1.35e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01453 K12614 - oeu:111411319 389.037