Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01448 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCTTGGACACCTGAGGAGGATATCATCCTTGTCTCATACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCCTCGTACCTTCCGCAAAGAACAGATAATGATATAAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTTAAGAAATTTCAAGCTGCCATGGATCCCCACTCAGCATCAGACTCAGCCACCAGTGGCCAGTATCTACCAAAGAGCTTTAACGACAGAAGAAGTTTAGACATGAGCAGCAACAACAATAACCATGTCTCCTCCGTTAAGCTTAGTCAGTCTCAGTCCTCCACATATGCGTCAAGCACCGAGAACATCTCAAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGCCACTCAAGAGATCCCATGATGAAGAGCTCCAAAGCATTGATGATGATAATAACAACAACAACAACAACTTTGAGAGCACTAACAAACTGGTGAAGTGTGCATCACTGCCTGCTTTGAACCTTCATCATCAGCACAAAAGGAACAAAGATGAGCAAGAGGGTGGCGTAGATATGGCTTCTGCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACATGCGATTCCATGCCTGATAAGAGTCCTGAAGCGGCTGCGGAATCTTCTCATGAAGTCTGTCATGAAGAGAGGATTAGGCAAAAATCTGAGAACAACAACAGTGCTCCTCCATTGTCATTTCTGGAGAAGTGGCTCTTAGATGAAAGCGTTGGTCAAGTGGAGGAGATGATGGAGTTGTCTCCAATGTTCTAA 1014 0.4467 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAAMDPHSASDSATSGQYLPKSFNDRRSLDMSSNNNNHVSSVKLSQSQSSTYASSTENISRLLEGWMRSSPKPLKRSHDEELQSIDDDNNNNNNNFESTNKLVKCASLPALNLHHQHKRNKDEQEGGVDMASAHEEFDSILSFENLNNAAWDKSTCDSMPDKSPEAAAESSHEVCHEERIRQKSENNNSAPPLSFLEKWLLDESVGQVEEMMELSPMF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01448 337 CDD SANT 69 112 IPR001005 -
Viun1g01448 337 MobiDBLite consensus disorder prediction 190 204 - -
Viun1g01448 337 MobiDBLite consensus disorder prediction 285 303 - -
Viun1g01448 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun1g01448 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun1g01448 337 Gene3D - 68 134 - -
Viun1g01448 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Viun1g01448 337 Gene3D - 13 66 - -
Viun1g01448 337 CDD SANT 16 61 IPR001005 -
Viun1g01448 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Viun1g01448 337 MobiDBLite consensus disorder prediction 188 216 - -
Viun1g01448 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun1g01448 337 FunFam Transcription factor MYB60 68 138 - -
Viun1g01448 337 MobiDBLite consensus disorder prediction 126 170 - -
Viun1g01448 337 MobiDBLite consensus disorder prediction 123 170 - -
Viun1g01448 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun1g01448 337 SMART sant 66 114 IPR001005 -
Viun1g01448 337 SMART sant 13 63 IPR001005 -
Viun1g01448 337 MobiDBLite consensus disorder prediction 274 311 - -
Viun1g01448 337 FunFam MYB-related transcription factor 13 66 - -
Viun1g01448 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 214 - -
Viun1g01448 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01448 Viun-Chr1 25947878 25949612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01448 1 136 MYB Transcription Factor Family AT5G62470 81.884 3.35e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g01448 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01448 K09422 - gmx:100817854 532.717