Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01436 ATGGATTCTTCTTCATGGTACTTCAATAATGTTGTTGGTGAAGGTTTCAACGGAGTCATGAGTTTCATCCCTTCTTTTCACGTGGGTTCACAAGCTCCATCCTTGGGTCACAGCAAGGGGTTTTTGGGTCCAAACCTTGAGATGGGTCTTCAGATGTTGAGCCCTTCAATGGTTCAGCATCAGAGTAGGGGGAAAAAGAGAACCAGTGATGAAGGGGTTGCAAACAAGAACCTGTCTTTGAAACATGGGGAAGAAGAAGAAGCTAACGGCTCCATTTCAGGAAAAAACGGGTTCACCAAGCTTTGTGCAAGAGGTCACTGGAGGCCAGCGGAAGATGACAAACTGAAGGAGCTGGTGACCCAATATGGTCCCCAAAACTGGAACTTGATAGCTGAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGATGGTTTAACCAGTTAGATCCTAAGATCAACAAAAAGAGTTTTTGCGAGGAGGAAGAAGAAAGGCTTTTGAGTGCTCATAAAATGTATGGAAGCAAATGGGCAATGATTGCAAGACTATTTCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCACGTGATGATGTCTAGGAGGCAGAGGGAGCAGTCTAGTGGCGTGTATAGAAGGAGAAAACCTCTTATCAATGAACCTCTTCCAAAGGGTTTGAATCTGACACTGTCTAACAATGCAACTAGTGATGACTCAACCATCTCAAACACCATTGATGAATCTGCTTCAACTTGCACCAACCTCTCCCTAACTCCCTCCTCAGCCAAGTTATTCACTCCTTTTGGACTCTTACACCAACCAGGAGAATCAAGAGAGGATGTGTGGTTGAACAAGTATTTTGGTGGTTGGAAAGGGTCAGAAGGTGTGGGAAAAAGGGTAATGGTGGGAGTGGACCAGTCTAGTTTTTCAGATGCAAACTCAGAAGTATCAGTATCTGAGTCAGGTGTCACCAATAGGTCCAATCTCTCAATTTCTGAAGAGAAAGAGAGTGAAACCATGGATGATAAGATTAACAACATGTCATTCATTGATTTTCTTGGAGTAGGAGCTACTTAG 1083 0.4331 MDSSSWYFNNVVGEGFNGVMSFIPSFHVGSQAPSLGHSKGFLGPNLEMGLQMLSPSMVQHQSRGKKRTSDEGVANKNLSLKHGEEEEANGSISGKNGFTKLCARGHWRPAEDDKLKELVTQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPKINKKSFCEEEEERLLSAHKMYGSKWAMIARLFPGRTDNAVKNHWHVMMSRRQREQSSGVYRRRKPLINEPLPKGLNLTLSNNATSDDSTISNTIDESASTCTNLSLTPSSAKLFTPFGLLHQPGESREDVWLNKYFGGWKGSEGVGKRVMVGVDQSSFSDANSEVSVSESGVTNRSNLSISEEKESETMDDKINNMSFIDFLGVGAT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01436 360 FunFam MYB transcription factor 104 155 - -
Viun1g01436 360 MobiDBLite consensus disorder prediction 56 94 - -
Viun1g01436 360 CDD SANT 107 148 IPR001005 -
Viun1g01436 360 CDD SANT 161 201 IPR001005 -
Viun1g01436 360 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Viun1g01436 360 PANTHER MYB PROTEIN-RELATED 104 254 - -
Viun1g01436 360 Gene3D - 104 155 - -
Viun1g01436 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 205 IPR017930 -
Viun1g01436 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 154 IPR017930 -
Viun1g01436 360 MobiDBLite consensus disorder prediction 63 89 - -
Viun1g01436 360 ProSiteProfiles Myb-like domain profile. 104 150 IPR001005 -
Viun1g01436 360 SMART sant 155 203 IPR001005 -
Viun1g01436 360 SMART sant 103 152 IPR001005 -
Viun1g01436 360 Pfam Myb-like DNA-binding domain 107 167 - -
Viun1g01436 360 SUPERFAMILY Homeodomain-like 104 197 IPR009057 -
Viun1g01436 360 Gene3D - 157 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01436 Viun-Chr1 25785719 25788309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01436 85 360 MYB Transcription Factor Family AT5G17800 45.583 1.06e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g01436 Myb_DNA-bind_6 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01436 K09422 - gmx:100791795 439.499