Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01435 ATGGAAGATGAGAGGCAGAAAGAGGGAAAGAGTCCAAGGCATGGCCCCGAGAAGAGTGAAGCGGTTCGGTCAAGGTGGACTCCCAAGCCGGAACAAATTCTCATACTCGAATCCATCTTCAACAGTGGCATGGTGAACCCTCCCAAAGATGAAACCGTCAGAATAAGGAAGCTGCTTGAGAAATTCGGTGCTGTGGGTGACGCCAACGTCTTCTACTGGTTCCAGAACCGCCGCTCCAGATCCCGCCGCCGCCAGCGTCAGTTGATGCAGCAGGCGGCTGCCACCGCCGCTGCGGTTAACCAGCCTCTGCCTCAGCCGCAGCCGCAGCCTCAGCCTCAGCCTCAGGTTCAGCATCATGGTCTTGTTGGTTCTGGTGCAATTCAGCATGATCATCATCATAATCAGGTTAACCTTGTTGCAAGTGAAAGTGCTACTCCAAACATGGGTCTTGGTTCTTGTGTTTCTTATGATCTCCTAGGTGGTTCCTCTTCATCTTGTAGTGGTGGTGGACAACAAGGCATGGGTTGTTTCTTTTCTGGTTCTTCTCCTCAAATGTGTTTTCCTGAAATGATTGATCACACCTCACCTGCACCATCGGTTTTGTTCCCTCCTTTTGATCCCAATTTGAGCTTCCACACTGGATATGGAGGCACCAATATCTCAGCATTCATCACAGTTTTCATCAATGGGATGGCAACAGAACTTCCAAAGGGACCAATAGACATGAAGACAGTGTTTGGAGAAGATGTTATTCTGGTTCATTCCTCTGGAGTGCCAATTCTCACCAATGAATTTGGATTCTTAATGCACAACCTTCAGCATGGAGAAAGCTACTTTCTGGTATCAAAGTCAACATAA 858 0.4848 MEDERQKEGKSPRHGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQLMQQAAATAAAVNQPLPQPQPQPQPQPQVQHHGLVGSGAIQHDHHHNQVNLVASESATPNMGLGSCVSYDLLGGSSSSCSGGGQQGMGCFFSGSSPQMCFPEMIDHTSPAPSVLFPPFDPNLSFHTGYGGTNISAFITVFINGMATELPKGPIDMKTVFGEDVILVHSSGVPILTNEFGFLMHNLQHGESYFLVSKST 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01435 285 Gene3D - 23 89 - -
Viun1g01435 285 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Viun1g01435 285 SMART HOX_1 21 88 IPR001356 GO:0003677
Viun1g01435 285 MobiDBLite consensus disorder prediction 1 26 - -
Viun1g01435 285 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Viun1g01435 285 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 284 IPR044558 GO:0003700|GO:0048830
Viun1g01435 285 MobiDBLite consensus disorder prediction 83 119 - -
Viun1g01435 285 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Viun1g01435 285 MobiDBLite consensus disorder prediction 86 102 - -
Viun1g01435 285 FunFam WUSCHEL-related homeobox 11 23 90 - -
Viun1g01435 285 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01435 Viun-Chr1 25761042 25763436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01435 7 285 Wox Gene Family AT5G17810 44.781 3.24e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun1g01435 Homeodomain 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01435 - - gmx:100818735 328.176