Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01422 ATGGTGTACTGCAGTCACTGTGCCAAAAATGTAGCTGGGGAGCGACTGGATGACGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTACATTTGTCAAGAATGCGGCAGGGCAGAGTAAATTATCAGGTAATTACGTAAGAACAGTTCAAAGCGAGTTCTCTGAGTCACGTCAAAGGACTTTAGATAGAGCTCATGATGAGATTAAATATCTAAGTTTGGGCCTTGGAGTTCAGGATGAACATATGGCTGACCAAGCACTGACCTTTTATAAAATAGCGCTTGAGCGAAACTTCACTCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTTTATATTGCATTTCGTCACAACAACAAGCCGTACCTTCTTATTGATTTTTCAAATTATTTAAGAATAGATGTCTATGTTCTAGGATCGGTTTTCTTGCAGCTTTGTGAAGTGCTGAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTATTGATCCTAGTCTTTTTATTCATAGATTTACTAAAAATTTGATTAAGCGAGGGAGTAAGGCAGTCTCTGATACTGCTCTGACCATTGTTGCAAGTATGAAACGAGACTGGATGCAGACAGGGAGGAAACCTAGTGGTCTATGCGGTGCGGCATTATACATTTCTGCTCTTGCACATGGAATTAAATGCTCTAAACCCGATATTCTTAGAATCGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTGGAATTTGAGAATACGAAATGTTCTAGCTTGACAGTTGAGGAGTTGGATACCATGGCAAAGGAGCAAGAAAATAATCCAACAGTAATGCCAGAAGGTGAATTGAAAGCGGGTATTTCGTCGAAAGATCTGCTGTGTGAGCACAAGGACAGTGGGGCTTCCCATTTTGCGCTTGGATTGTGTGAAGCATGCTATAAGGATTTCGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCGTTCCAGCGTGCTGAGAGGGAAAGAGAGAAAAGAGCACTTCTCGAAGAGAGTGTTGATGAAGCATGTGATTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCATAGAGAAGATTTGCCTGTGCCAGAAGGGGCTAATGTTGCGCATGAGTCCACTAAAGATGGTGAATATGATGATTCATTTAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGACGAAGACGTTGATTTATACATTCATGATGAGGAGGGGAGGAAGATCAAGAAGATACTATGGGAAGCAGCAAATCGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAATTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCAGAGGATTTACTTGCGGCAAGAGAACTCGCTGCATCTGCTTCTGAAGCCGTGGCAAAATCCAGAAAGGAAATGAAACAGAGACGAGCCAATGAGGCAAAAAATATGGGGCCAGCTCAATCTGCTGCAGAGGCCTTCGGCCAAATGTCTAAAAAAAGGCAATTGCAGAGTCTGAAATCTAAAGTCAATTTTGATCGACTGGGAGAATTATTTAATGAACTGGAAAAAACGGATGATCCCAAGAAAGAGAAGAAAGCACGATTTGATTCACTCCTAGATAATGATGACAAGATAAAGTCATTTGAGCATAATGATGACAAGATAAAGTCATTTGAGTACAAAAATGACGACGAGATTGGATCGGTGGATGAATTTGAAGATGATATGGGAGAGATGTATCAAAGTGGGTTGTCTACTGAGAATATTGCAGATACATATTTCCCTGAGGATGATGGATATGGCTATAACGATTATGATTATTAA 1872 0.4145 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPTFVKNAAGQSKLSGNYVRTVQSEFSESRQRTLDRAHDEIKYLSLGLGVQDEHMADQALTFYKIALERNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSNYLRIDVYVLGSVFLQLCEVLRLGEHPIVQKPIDPSLFIHRFTKNLIKRGSKAVSDTALTIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILRIVHVCEATLTKRLVEFENTKCSSLTVEELDTMAKEQENNPTVMPEGELKAGISSKDLLCEHKDSGASHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAEREREKRALLEESVDEACDLANASNDQFKSHREDLPVPEGANVAHESTKDGEYDDSFREDESETLSDIDDEDVDLYIHDEEGRKIKKILWEAANREYLEEQAAKEAIAAANKKAFEANFENCSEDLLAARELAASASEAVAKSRKEMKQRRANEAKNMGPAQSAAEAFGQMSKKRQLQSLKSKVNFDRLGELFNELEKTDDPKKEKKARFDSLLDNDDKIKSFEHNDDKIKSFEYKNDDEIGSVDEFEDDMGEMYQSGLSTENIADTYFPEDDGYGYNDYDY 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01422 623 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Viun1g01422 623 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Viun1g01422 623 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Viun1g01422 623 SUPERFAMILY Cyclin-like 172 267 IPR036915 -
Viun1g01422 623 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 521 IPR000812 GO:0006352|GO:0070897
Viun1g01422 623 Gene3D Single helix bin 400 448 - -
Viun1g01422 623 SUPERFAMILY Cyclin-like 86 162 IPR036915 -
Viun1g01422 623 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Viun1g01422 623 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Viun1g01422 623 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Viun1g01422 623 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Viun1g01422 623 SUPERFAMILY Zinc beta-ribbon 2 43 - -
Viun1g01422 623 SMART cyclin_7 76 158 IPR013763 -
Viun1g01422 623 SMART cyclin_7 176 259 IPR013763 -
Viun1g01422 623 Gene3D - 173 264 - -
Viun1g01422 623 Gene3D - 63 164 - -
Viun1g01422 623 FunFam Transcription factor IIIB subunit 173 262 - -
Viun1g01422 623 MobiDBLite consensus disorder prediction 366 405 - -
Viun1g01422 623 Pfam Brf1-like TBP-binding domain 407 535 IPR011665 -
Viun1g01422 623 MobiDBLite consensus disorder prediction 367 396 - -
Viun1g01422 623 MobiDBLite consensus disorder prediction 603 623 - -
Viun1g01422 623 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01422 Viun-Chr1 25626374 25643673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01422 1 521 Inorganic Solute Cotransporters AT2G01280 42.373 1.76e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01422 K15196 - gmx:100817609 930.628