Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01405 ATGAATATAAACTGCACAAGTTCAGAATCAGTGACAGGAATAGTAAAGGGTTCACATGAGTTCAAGCTAAAGGGTTATTCTCTGGTTAAGGGAATTGGAGTGGGAAGATTTATTGCAAGTGAGACGTTCAATGTTGGAGGGTATGAGTGGGCTATACACTTCTACCCTGACGGTATAGACACCCACGAACACGCCACAGTTTATGTCTCGGTTTACGTTGCGCTACTTTCCGAGGCTGATGATGTTCGAGCCAAGTTTGAATTGTCCATGCTAGACCAAAGAGGGGAAGGGGTGGACTTTGTCCTTGGTCACTTCAATGGCACCCTCGGGACTAAGCCTCACATTTTATCAACCGGGGATATGTGGGGGATTAATCGTTATTACAAACGCTTTCACTTTGAACACTCAACGTACCTCAAAGATGATTGTCTTCAACTAAATTGCACTGTTGGGGTTTTGCCTACCAAAGTAGAGAATTCCATGACTATAGAAGTTCCTGAATCTAACATTGCAAAAAGTTTTGAGATGCTGTTTGAAGATGAACAATCATCTGATGTTACTTTTTCTGTTGGAGGAAACAAGTTTTATGCACATAAGATTGTATTGGCGGCTCGGTCAAGTGTGTTTAAATCTCAGTTTTTCGGTGGAACCGACAAGGTTGATAGAGAGATTCTTGTTAATGACATGGAGCCCAAGGTTTTTAAGGCTTTACTTCAGTTTATATATAAAGATACTCTTATAGAAGATGAAGAACTCCATTTGTCAGTGTCTTCATCCATGGCTTCTCTCTCAGAATTGTATGTAACAAAGGTTCTGGCTGCTGCACACAAGTACGACTTACCAAGGCTAAAGTTGATGTGTGAATCTGTTCTTTGCAAACATATATCTATAAATTCTGTTGCTCATATTCTGGTTATTTGTGATTGTTATGAGGCCACCGGATTGAAGTCCACATGTCTGCAATTTTCAGCAGAAAACCTTAATGCTGTGCTGAAATCTGATGGTTTCAAGCATATTAAAGAAAATTGTCCAGATCTTATATTTGAACTGCTAAAGACTGTGGCAGCAGGAATTGGGCGTGTGAAATCTTCTTATGGTGATGATGACAGTGATGCATCAACACCTGAGCCTAATGAAATAGAAGCTGAGAGCACAAGTTATAATCCTTCCAGTGATGAGGAAAACCATGTGGGTTGGTAG 1200 0.4042 MNINCTSSESVTGIVKGSHEFKLKGYSLVKGIGVGRFIASETFNVGGYEWAIHFYPDGIDTHEHATVYVSVYVALLSEADDVRAKFELSMLDQRGEGVDFVLGHFNGTLGTKPHILSTGDMWGINRYYKRFHFEHSTYLKDDCLQLNCTVGVLPTKVENSMTIEVPESNIAKSFEMLFEDEQSSDVTFSVGGNKFYAHKIVLAARSSVFKSQFFGGTDKVDREILVNDMEPKVFKALLQFIYKDTLIEDEELHLSVSSSMASLSELYVTKVLAAAHKYDLPRLKLMCESVLCKHISINSVAHILVICDCYEATGLKSTCLQFSAENLNAVLKSDGFKHIKENCPDLIFELLKTVAAGIGRVKSSYGDDDSDASTPEPNEIEAESTSYNPSSDEENHVGW 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01405 399 MobiDBLite consensus disorder prediction 363 399 - -
Viun1g01405 399 CDD BTB_POZ_BPM_plant 170 292 - -
Viun1g01405 399 CDD MATH 17 150 IPR002083 GO:0005515
Viun1g01405 399 ProSiteProfiles MATH/TRAF domain profile. 16 150 IPR002083 GO:0005515
Viun1g01405 399 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 14 153 IPR008974 GO:0005515
Viun1g01405 399 Pfam BTB/POZ domain 175 294 IPR000210 GO:0005515
Viun1g01405 399 SUPERFAMILY POZ domain 161 295 IPR011333 -
Viun1g01405 399 Gene3D Potassium Channel Kv1.1; Chain A 159 296 IPR011333 -
Viun1g01405 399 ProSiteProfiles BTB domain profile. 184 250 IPR000210 GO:0005515
Viun1g01405 399 SMART BTB_4 184 295 IPR000210 GO:0005515
Viun1g01405 399 MobiDBLite consensus disorder prediction 377 393 - -
Viun1g01405 399 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 8 351 IPR045005 GO:0016567
Viun1g01405 399 Gene3D - 297 364 - -
Viun1g01405 399 SUPERFAMILY TRAF domain-like 14 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01405 Viun-Chr1 25348276 25349770 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun1g01405 BTB 2.2e-27 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01405 K10523 - gmx:100809683 424.091