Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01404 ATGGCGATGGAGGAGGTGACAGAAGAGCGTAGCAGCAGTTCCGAATCCGTGACAGAGACAGTGTTGGGGTCTCACACGTTCGAAATAAAGGGCTACTCTTTGACAAAGGGAATGGGCATTGGAAAATGCGTTGCGAGCAACAAGTTCAGCATTGGAGGGTACGAGTGGGGGATGCAGTTCTACCCAGATGGCAAATACTCCAAAGATAACTCCACTTATGTTTCTCTCTTCATCACACTCTTCTCCAACGCCACTGATGTTTCCACCTTTTATGAAATCAACTTGCTCGATCAGAGACCAAAACGGAAGCGCCATGCTGCTACCCACTACGATCACTCCTTCCAATGCGGTCCCTGCGTTTTCAAAAGCCGTGGCAGCATGTGGGGTTATAACCGGTTTTGCAATCGGAAAGATCTTGAAGCTGCAACTTTTCTGAAGAATGACTGCTTGAAGATAAGGTGCACTATTGGTGTTGTGGTGACAGCGTGCAGTGATTCTTCAAAGTTAAAAACAATACAAGTTCCTGAGTCTGATATGGGAGAACAGTTCGGAGTGCTGTTAGATTCTGGGGCCTTTTCTGATATTACTTTCTCAGTTCGAGGACAAAAGTTTCATGCTCATAAGCTTGTATTGGCTACTCGCTCAAAACTGTTTCTAACTGAGATTGTTAATGGAACGGAGAAGAATGAAGATGGTGAAATAGTTGTTAATGACATTGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTACAGAGACTCTCTAATACCAGATAAAGAGCTTTATAAGTCACGTCCATCACTGTATTCTTCGTTATCTGAAACATTTCCTGTAAAGTTGTTAGCAGCTGCAATAAAGTTTGATTTATCAAGACTTAAGCTGATGTGTGAATATGTACTTTGCAATAATATATCCATAAATTCTGTTGTCTATATTTTACTTCTCGCTGATCGTAATCATGCAGCTGAATTAAAGTTCGCGTGTCTAAAATTTGCTGCTCAAAACCTTACTGCTGTCATGCAATCTGACGGCTTCAAATATCTTACTCAAAATTATCCATTGATGCAAGCCGAACTGCTGAAAACTGTGGTAGAATGCATGGAACCATATATTGGAGAACAAAAACATGAATCTGTGAAGAGCCAATCCTCAGATAATGGTCATTGA 1170 0.412 MAMEEVTEERSSSSESVTETVLGSHTFEIKGYSLTKGMGIGKCVASNKFSIGGYEWGMQFYPDGKYSKDNSTYVSLFITLFSNATDVSTFYEINLLDQRPKRKRHAATHYDHSFQCGPCVFKSRGSMWGYNRFCNRKDLEAATFLKNDCLKIRCTIGVVVTACSDSSKLKTIQVPESDMGEQFGVLLDSGAFSDITFSVRGQKFHAHKLVLATRSKLFLTEIVNGTEKNEDGEIVVNDIEPKVFKALLHFIYRDSLIPDKELYKSRPSLYSSLSETFPVKLLAAAIKFDLSRLKLMCEYVLCNNISINSVVYILLLADRNHAAELKFACLKFAAQNLTAVMQSDGFKYLTQNYPLMQAELLKTVVECMEPYIGEQKHESVKSQSSDNGH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01404 389 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 160 IPR008974 GO:0005515
Viun1g01404 389 Pfam BTB/POZ domain 186 304 IPR000210 GO:0005515
Viun1g01404 389 SMART math_3 27 139 IPR002083 GO:0005515
Viun1g01404 389 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 359 IPR045005 GO:0016567
Viun1g01404 389 ProSiteProfiles MATH/TRAF domain profile. 22 156 IPR002083 GO:0005515
Viun1g01404 389 SUPERFAMILY POZ domain 172 304 IPR011333 -
Viun1g01404 389 Gene3D - 304 382 - -
Viun1g01404 389 CDD MATH 23 156 IPR002083 GO:0005515
Viun1g01404 389 SUPERFAMILY TRAF domain-like 19 158 - -
Viun1g01404 389 SMART BTB_4 193 305 IPR000210 GO:0005515
Viun1g01404 389 Gene3D Potassium Channel Kv1.1; Chain A 169 300 IPR011333 -
Viun1g01404 389 ProSiteProfiles BTB domain profile. 193 260 IPR000210 GO:0005515
Viun1g01404 389 CDD BTB_POZ_BPM_plant 179 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01404 Viun-Chr1 25331079 25334451 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun1g01404 BTB 2.2e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01404 K10523 - gmx:100809683 451.055