Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01395 ATGGCTAATCAGCCACAAGACAATGTTGAAGGCACTTCCAGCAGAGTAAATAAGCAGAAAAGTAAGGTCTCAAAGTGTGTCAGGCCACGAGCATCATCTCCTCCATGCGCAGCATGCAAGAAAATGAGAAAGAAATGCACCAGTGACTGCATCTTTGCACCTTATTTTGGTTCTAGCCAGGGCTCAACGCGGTTTGCAGCGGTGCACAAGGTGTTTGGTGCAAACAATTTGTCAAAACTATTGCTAGAAGTTGAAGAGATTCATCGTAATGAGGCCATAAATTCCTTATGCTACGAAGCTCAAGCAAGGCTAGCCAATCCTGTTCATGGTTGTGTCTCCACCATTTCTGCTTTGCAACAACAGGTGACATCATTGCAAGGAGAGCTTGCTATGGTTCAAAATCAATTGATTAATACACAAAATTTATATGAAAGTCTCCTTCAGAGGACATATCATCAACAACAACCAAACATCAATGTAGTTGTGCAACCTACACAGTGCAACAATATGCCTCCTTCTGCAAATAATTTGATGAACATGAGCTTCTTCAACCCAGCTTTTGATCACCTTGCAATGCAGACAACACCTTCAACAAACAACACAGACCCTCTTCAATTTTGTGGGCTTCCCCATTTCAACATCAACATGCCGCATCTCTTTCCATGA 666 0.4234 MANQPQDNVEGTSSRVNKQKSKVSKCVRPRASSPPCAACKKMRKKCTSDCIFAPYFGSSQGSTRFAAVHKVFGANNLSKLLLEVEEIHRNEAINSLCYEAQARLANPVHGCVSTISALQQQVTSLQGELAMVQNQLINTQNLYESLLQRTYHQQQPNINVVVQPTQCNNMPPSANNLMNMSFFNPAFDHLAMQTTPSTNNTDPLQFCGLPHFNINMPHLFP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01395 221 Coils Coil 115 149 - -
Viun1g01395 221 Pfam Lateral organ boundaries (LOB) domain 35 133 IPR004883 -
Viun1g01395 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 33 178 - -
Viun1g01395 221 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g01395 221 ProSiteProfiles LOB domain profile. 34 136 IPR004883 -
Viun1g01395 221 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01395 Viun-Chr1 25272229 25275174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01395 35 140 AS2 family AT3G03760 65.094 4.48e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun1g01395 LOB 4.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01395 - - pvu:PHAVU_001G115200g 362.459