Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01394 ATGGCAAATATACACCATCCCTCAGTGTTTTTGGTGTTACTTACTTTTGTTCTTTCTATCTGTTACTCAGAGCAATTACAATCTTCTCACTCTCAGACTCTTCTCAGAATTCAGCAGCAATTGAACTTTCCTGCTGCTTTGAGCAACTGGAACAACGACACAGATTTTTGCAGCACAGATTCAAACTCTTCCCTCTCTGTAGTGTGCTATGAAGACACCATAACACAGCTTCACATAATAGGTGAAAGAAGAGATTCACCTCTCCCAAGAAATTTCTCAATAAACTCCTTTGTCACAACACTAGTAAGGCTTCCCAGTTTGAAAGTCCTCACATTGGTTTCTCTGGGTATTTGGGGTCCTTTGCCTAGTAAGATAGCTCGTTTGTCATCCCTGGAAATAGTTAACATGAGTTCCAATTTTCTCTATGGCTCCATTCCTCAGGAACTTTCTTCACTGAAAAATCTCCAAACACTCATTTTTGACAACAACATGCTGGCTGAAACATTTCCTCCTTGGCTTGATTCACTTCCAGCCTTAACTGTGCTAAGTTTGAAGAATAACATGCTCAATGGATCTCTACCGAATTCCCTTGGCAATGTGGAGAATCTGAGAGCTCTTTCACTTTCTCATAATCACTTGTATGGGGTGCTCCCTGATTTCAGTCGTTTGAAGAATCTTCAAGTGCTTGAATTGGATGATAATGCCTTTGGACCTGAGTTTCCTCAACTTGGTAACAAGTTGGTTACACTAGTGCTAAGAAACAATAGATTCAGGGATGGTATTCCTGCTGAATTGATCTCATACTATCAGCTAGAACATTTGGATATATCATCAAATTCATTTGTGGGGCCATTTCAACCAGCATTGTTGTCACTTCCTTCTATTACTTATCTGAATATTTCTGGTAACAAATTAACTGGGATGCTTTTTGAGAATCTGTCTTGCAATTCAGAGCTTGATGTAGTGGATTTATCCTCAAATCTTTTGACTGGGAACTTACCTAAGTGTTTAGTGTCAAATTCCAGTGATAGCACTTTTCTTTATGCTAGAAATTGTCTAGACAGTGCGAATCAAAATCAGCAGGCGCAGCCTTTTTGCCACACTGAGGCTCTAGCTGTGGGAATATTGCCTGAGAGAAAGAAGCACAGACAAGTATCTAAGGTAGTTCTTTCCCTAGGCATTGTAGGTGGGACTCTTGGAGGAGTAGCACTTGTTTTGCTAATTTTCTTTATTGTTAGAAGAGGAAATGCTAGAACCAAAATGAAGAACCCTCCAACAAGATTAATATCAGAAAATGCTGCTTCTGGTTACACTTCAAAGTTGCTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTGGGAGCAGTTGGCCTACCAACCTATCGAAGTTTCTCATTGGAAGAGATTGAGGCAGCTACAAACTACTTTGACACAGCTTCTTTAATGGGTGAAGATTCTTATGGGAGGATGTACAGAGGCCAGTTGAAGAATGGTTCGGTTGTTGCCATTCGATGTGTAGAAATGAAAAAGAAATACAGCACTCAAAACTTCGTGAACCACATAGAACTGATATCAAAACTCAGGCATCGTCATTTAGTCAGTGCTATTGGACACTGCTTTGAATGTTCTCTGGATGATTCGAGTGTCAACAAAGTATTTCTTGTCTTTGAATACGTACCAAATGGCACGCTCAGGAATTGGATCAGTGATGAAAATGCTAAAAAATGCTTGAGTTGGACCCAACGCATTGGAGCTGCAATTGGAGTGGCAAAGGGAATTCAGTTTTTACATACAGGGATTGTCCCTGGTGTATATTCCAACGATCTCAAGATAGAAGATGTTTTAATGGATCAGAATCTTGTTGCGAAAATCAGCAGTTATCACCTACCTTTGTTATCTAACATGGGGAAGGTTCGACATGGAAGTTCTTCAAGTGGACTGAAACACTCTAGCAACAATAAAAGTGTAAAACATGAAGATAAATCTGATATATACGACCTTGGAGTGATACTACTCGAACTCATTCTAGGAAGGCAAATAAAGACAGCAAATGATGCAGATGCTTTTAGAGATCTGTTGCAAGCAAGTTTAGGAGCAGATGAAGAGGGAAGGAGGAGTGTGGTTGATGCAGCAATTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATGGAGATATGTGTGAGGTGTATGGTTAAAGAGGCAGAAGATAGGCCCTCTATAGAGGATGTTTTGTGGAACTTGCAGTTTGCATCTCAAGTGCAGGATGCATGGAGAGGGGATTCACAAAGTAGTGAAGGGTCACCAAATTCAGAATCTCGAGGACTTCCCTTTCAGTAG 2346 0.4024 MANIHHPSVFLVLLTFVLSICYSEQLQSSHSQTLLRIQQQLNFPAALSNWNNDTDFCSTDSNSSLSVVCYEDTITQLHIIGERRDSPLPRNFSINSFVTTLVRLPSLKVLTLVSLGIWGPLPSKIARLSSLEIVNMSSNFLYGSIPQELSSLKNLQTLIFDNNMLAETFPPWLDSLPALTVLSLKNNMLNGSLPNSLGNVENLRALSLSHNHLYGVLPDFSRLKNLQVLELDDNAFGPEFPQLGNKLVTLVLRNNRFRDGIPAELISYYQLEHLDISSNSFVGPFQPALLSLPSITYLNISGNKLTGMLFENLSCNSELDVVDLSSNLLTGNLPKCLVSNSSDSTFLYARNCLDSANQNQQAQPFCHTEALAVGILPERKKHRQVSKVVLSLGIVGGTLGGVALVLLIFFIVRRGNARTKMKNPPTRLISENAASGYTSKLLSDARYISQTKKLGAVGLPTYRSFSLEEIEAATNYFDTASLMGEDSYGRMYRGQLKNGSVVAIRCVEMKKKYSTQNFVNHIELISKLRHRHLVSAIGHCFECSLDDSSVNKVFLVFEYVPNGTLRNWISDENAKKCLSWTQRIGAAIGVAKGIQFLHTGIVPGVYSNDLKIEDVLMDQNLVAKISSYHLPLLSNMGKVRHGSSSSGLKHSSNNKSVKHEDKSDIYDLGVILLELILGRQIKTANDADAFRDLLQASLGADEEGRRSVVDAAIRKACLDQSLKTMMEICVRCMVKEAEDRPSIEDVLWNLQFASQVQDAWRGDSQSSEGSPNSESRGLPFQ 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01394 781 Gene3D Ribonuclease Inhibitor 27 243 IPR032675 -
Viun1g01394 781 Pfam Protein tyrosine and serine/threonine kinase 481 747 IPR001245 GO:0004672|GO:0006468
Viun1g01394 781 SUPERFAMILY L domain-like 60 353 - -
Viun1g01394 781 Gene3D Ribonuclease Inhibitor 244 363 IPR032675 -
Viun1g01394 781 ProSiteProfiles Protein kinase domain profile. 477 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01394 781 SUPERFAMILY Protein kinase-like (PK-like) 459 754 IPR011009 -
Viun1g01394 781 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
Viun1g01394 781 Gene3D Phosphorylase Kinase; domain 1 448 559 - -
Viun1g01394 781 MobiDBLite consensus disorder prediction 759 781 - -
Viun1g01394 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 244 - -
Viun1g01394 781 Pfam Leucine rich repeat N-terminal domain 561 581 IPR013210 -
Viun1g01394 781 Pfam Leucine rich repeat N-terminal domain 32 58 IPR013210 -
Viun1g01394 781 Gene3D Transferase(Phosphotransferase) domain 1 560 768 - -
Viun1g01394 781 PANTHER UNNAMED PRODUCT 95 680 - -
Viun1g01394 781 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Viun1g01394 781 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Viun1g01394 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 450 559 - -
Viun1g01394 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 245 362 - -
Viun1g01394 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 560 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01394 Viun-Chr1 25263232 25268482 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01394 43 779 Miscellaneous Gene Families AT3G03770 60.782 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Viun1g01394 PK_Tyr_Ser-Thr 7.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01394 - - gmx:100807539 1354.35