LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g01385	ATGCCTGAAGAAACGACATCGATTGACTACGTCATGGAGGCCGCATCTGGGGCCCACTTCTCCGGCCTCAGACTCGACGGCCTCCTACCTTCCTCCGCCACCGCCGCCGCCACCCCCGATTCAACCCTAGCCCCGGATTCCCACCCGAATCGCCCTTTCGTTATTGGAGTTTCTGGAGGTACTGCCTCTGGGAAAACCACTGTCTGCGACATGATCATTCAGCAGCTTCACGATCACCGCGTCGTCCTAGTCAATCAGGACTCGTTTTATCGTGGGCTGAGACCTGAAGAGTTGGAACGTGTTCATGAGTACAATTTCGATCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCATGGGGAAACTCATCAGTGGTCAGGGCGTGCATGTTCCCATCTATGACTTCAAGAAACATCAGCGTTCTTCTGATAGTTTTCGCCAGGTTAATGCCTCCGATGTGATTATATTGGAGGGGATTCTTGTATTCCATGATCAGCATGTGCGGGATCTGATGAACATGAAGATCTTTGTAGACACAGATGCTGATGTGAGGCTAGCTCGTAGAATTAGACGGGACACAGTTGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATTATTCCTCGCGGAGGTGATAATCATGTAGCCATTGATTTGATTGTGCAACATATCCGTACAAAACTTGGTCAACATGATCTGTGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACGTTCCAGATAAGAGGGATGCATACATTGATTAGGGACCGAGACATATCAAAGCATGATTTCGTGTTTTATTCAGATCGACTTATACGTCTGGTTGTCGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGATTACTCCCACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAAAAGTTGTGTGGTGTTTCAATTGTACGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGTAAAATTTTGATTCACCGGGATGGAGACAACGGAAAACAGCTAATATATGAAAAGCTTCCCAAGGATATTTCAGAACGGCATGTTTTGCTTCTTGACCCGGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAACCACATTATATTCCTGAACCTCATTTCTGCTCCTGAGGGAATCCATTGCGTGTGTAAAAGGTTTCCGTCATTGAAGATTGTCACATCTGAGATTGATGTTGAATTGAATGAAGAGTACCGTGTTATCCCAGGATTAGGCGAATTTGGTGATCGCTACTTTGGCACCGATGATTGA	1422	0.4494	MPEETTSIDYVMEAASGAHFSGLRLDGLLPSSATAAATPDSTLAPDSHPNRPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLRPEELERVHEYNFDHPDAFDTEQLLECMGKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQHVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPENHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVELNEEYRVIPGLGEFGDRYFGTDD	473

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g01385	473	Pfam	Phosphoribulokinase / Uridine kinase family	54	240	IPR006083	GO:0005524\|GO:0016301
	Viun1g01385	473	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	48	245	IPR027417	-
	Viun1g01385	473	FunFam	Uridine kinase	49	255	-	-
	Viun1g01385	473	PRINTS	Uridine kinase signature	82	93	-	-
	Viun1g01385	473	PRINTS	Uridine kinase signature	220	233	-	-
	Viun1g01385	473	PRINTS	Uridine kinase signature	184	194	-	-
	Viun1g01385	473	PRINTS	Uridine kinase signature	198	209	-	-
	Viun1g01385	473	PRINTS	Uridine kinase signature	127	142	-	-
	Viun1g01385	473	PRINTS	Uridine kinase signature	52	69	-	-
	Viun1g01385	473	PANTHER	URIDINE KINASE	48	382	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g01385	Viun-Chr1	25194375	25201226	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g01385	1	473	PRT Gene Family	AT5G40870	85.124	0.0	834

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g01385	K00876		-	gmx:100780005	896.345

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