Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01351 ATGGAAATTCAGTTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCAGTCAGCAGAGGAGGAAAGTTGAAAGGGAGAAGCAGAAACAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAAACAGCCGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGTGGATCAAACACTCGCACCAACTTCATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGGAATCTTCTTAACAACAAAAAAGGGATAAAGAAACAGGAAGATGCTAATGCTAATGCTAATAATGCAGCAGCTCCAAGATTAAGCAGCACTAGCACTGCCAGCACTAGTAGTACTTCTACTACTACAACTACTGATAGTAATCCAAACAATGGCAGTGGCAACAATGAGAAGTCTCTTTCTACCATGACACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGATTTTGGGTCAGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCCATTGCTCAAATATTGGATGTACCAAAGATTGATGATTGCATCACTGATGTAGCTGACTTGGAGCTTTCTGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAAACTCTCTGGGATCTTCCACCTTTATGCTCATTGTTCTGCTAA 846 0.4243 MEIQFQQPNLQHQKSGIAVSRGGKLKGRSRNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANANANNAAAPRLSSTSTASTSSTSTTTTTDSNPNNGSGNNEKSLSTMTPQSSNLFDDAYKPDLSNCREDFGSGHQSNTSWGFGPVFDRFPIAQILDVPKIDDCITDVADLELSEFERMKVERQISASLYAINGVQEYMETVQDSSETLWDLPPLCSLFC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01351 281 MobiDBLite consensus disorder prediction 1 37 - -
Viun1g01351 281 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Viun1g01351 281 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Viun1g01351 281 MobiDBLite consensus disorder prediction 117 180 - -
Viun1g01351 281 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Viun1g01351 281 MobiDBLite consensus disorder prediction 121 180 - -
Viun1g01351 281 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Viun1g01351 281 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Viun1g01351 281 MobiDBLite consensus disorder prediction 1 16 - -
Viun1g01351 281 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Viun1g01351 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 247 - -
Viun1g01351 281 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Viun1g01351 281 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Viun1g01351 281 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01351 Viun-Chr1 24654502 24655798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01351 24 281 AP2-EREBP Transcription Factor Family AT5G19790 43.284 2.92e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g01351 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01351 K09286 - gmx:100796898 457.988