Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01345 ATGGAGGAGAAGGTTGACAAATCTAAACAAGATCAAGCTTCCAATTCTAAATCCTATATGGTATTGGATTATCTTAAACTTTTGAATGATGAACCAGTTCGTGAGTCAAAGGTATTTGATTTTTTCAATGTGATAAACACAGGAAATTCATCTTCTTCTAGGGAAAATTACACCACCAAAAGAAAATATGAGAATAACAATGAAGTGAAACCATCAAAGACTAAGACTTTTTCTTGTAATTTTTGTAAGAAAGAGTTTTCTTCTTCACAAGCTTTGGGAGGGCATCAAAATGCCCACAAACAAGAACGTGCCCTTGCAAAGGGTCATCAAGGGATTGAAGTTGGTACTTTTGGATACCCTCATTTTCTCTACTATCCTTATCTCACAAACTCCTTTTATGGATCTTATAGTAGAACACTTGGGGTTCGAATGGAATCTATGATTCATAAGCCTTCGTACCTTTCATCCTCGTTAGGGTTTAGGTTTGGTCGTTCTTCTCTTGATGGATTGAGGAAGAAAGATTTGAATGCAAATAATGAAATTGTGATTATGGAAAATGACAAAACTTTGAGAAAAGAAGGTCATAATCTTACTATTAGACCAAACACTCCTTTTCTTAGTAAATCCTCTACAAATGTTGCAATCAAATCAAACCCAACCTTGTCTCCTCCATTCAATCCTGTGCACTTTGGTGGTCAATCCAAACAAGAAGGAACCTCTAATCCTAATTCTTCATTTGGGATTGATTTATCACTTAAGCTTTAG 765 0.3529 MEEKVDKSKQDQASNSKSYMVLDYLKLLNDEPVRESKVFDFFNVINTGNSSSSRENYTTKRKYENNNEVKPSKTKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKGHQGIEVGTFGYPHFLYYPYLTNSFYGSYSRTLGVRMESMIHKPSYLSSSLGFRFGRSSLDGLRKKDLNANNEIVIMENDKTLRKEGHNLTIRPNTPFLSKSSTNVAIKSNPTLSPPFNPVHFGGQSKQEGTSNPNSSFGIDLSLKL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01345 254 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Viun1g01345 254 MobiDBLite consensus disorder prediction 224 254 - -
Viun1g01345 254 Pfam C2H2-type zinc finger 77 101 - -
Viun1g01345 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Viun1g01345 254 Gene3D Classic Zinc Finger 50 113 - -
Viun1g01345 254 SUPERFAMILY beta-beta-alpha zinc fingers 74 104 IPR036236 -
Viun1g01345 254 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 254 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01345 Viun-Chr1 24594621 24595385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01345 72 152 C2H2 Transcription Factor Family AT5G10970 53.012 2.48e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g01345 zf-C2H2_6 9.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01345 - - vun:114190118 513.072