Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01314 ATGAATATGTGCCAAAATGTATCAGTTACCACTGAACGCCACCAAGATCAGGTCTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCACAGAACACGGAGGTGGATGTTGAGTTGGAGTGGCTTTCAGAGTTTGTTGAGGACTGTTTTTCAAGCCCCCCAAGCTTTGTGTTGGGAGGTGGTGGGACTAAGAGTACAAGCATAAGCATAAGCACAAGCAGCAGCAACCCTTGTTGTTCAGGCACATTGAAGAGACCCCAACAACAGAATGAGTCTCCTTTGCAAAGTTTTTCTGTGCCTGGGAAGGCCAGAAGCAAAAGGAAAAGGCTTTCAGCCCCAAGAAGGAAGGACCCTTTGAGCATATGGTCACAGCATTTGAACCCCCAGAATGAAGCCTTGAGTTGTGACCCTCCTCTCCTGAAACAGGCTTATTGGTTGGCTGACAGTGAACTCATGATGCCTAAGCCAAAGGAGGAGAAAGAAGTGAGTGAAGTGGTGGAGAAGAGCAAGGAAAGTTTTGGGGAGTGTGAGGTTGAAGGTAGTAGCAGTGGTGAACAAGCAGCAGCAATGGCTAGGAGATGCAGCCATTGCCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCTAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGACCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGACTCAACACCACTAG 795 0.4855 MNMCQNVSVTTERHQDQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSFVLGGGGTKSTSISISTSSSNPCCSGTLKRPQQQNESPLQSFSVPGKARSKRKRLSAPRRKDPLSIWSQHLNPQNEALSCDPPLLKQAYWLADSELMMPKPKEEKEVSEVVEKSKESFGECEVEGSSSGEQAAAMARRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMTQHH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01314 264 ProSiteProfiles GATA-type zinc finger domain profile. 191 227 IPR000679 GO:0006355|GO:0043565
Viun1g01314 264 Pfam GATA zinc finger 197 231 IPR000679 GO:0006355|GO:0043565
Viun1g01314 264 CDD ZnF_GATA 196 243 IPR000679 GO:0006355|GO:0043565
Viun1g01314 264 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355|GO:0043565
Viun1g01314 264 Gene3D - 188 261 IPR013088 GO:0006355|GO:0008270
Viun1g01314 264 SMART GATA_3 191 245 IPR000679 GO:0006355|GO:0043565
Viun1g01314 264 PANTHER GATA TRANSCRIPTION FACTOR 13 262 - -
Viun1g01314 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 255 - -
Viun1g01314 264 FunFam GATA transcription factor 187 264 - -
Viun1g01314 264 MobiDBLite consensus disorder prediction 82 124 - -
Viun1g01314 264 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01314 Viun-Chr1 24249585 24250944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01314 40 259 C2C2-Gata Transcription Factor Family AT4G32890 40.175 4.61e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun1g01314 GATA 6.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01314 - - gmx:100786479 368.237