Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01307 ATGGTGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGATTTCTTGGTAAGGTCTTGTCAGCAGAGAGAGCGAGTAAGCTAACTGGTAATGGTGAAAATAGTAGTGGTGATCAGCTTGGTAAGGACTCTAAAACATCAATGCTGAAGAATGCAAATGTAGGCAAACCTGTTGACGGAGATACAAAATCAAGAGGCCTCCCTATTCCCGAGCCAATTGCTGATAGACTTGGTGTCAATTATCCTTTTCCTCCCCATCTTGAGTATGCTTACCCTCCACCTGATGGAAATATATTAACGAATATTGTGAATGCTCTAATTGCTGTTCCTCGCTTTTACACTCAGGTTCTGCACTTGATGAACAAAATGAACATCCCTGCTCCATTTCGTATGGCACTGCCCACACCTCCATTACCTCCAGAGGTACCAGCACCACTTCCTCCTACTGTAACTATAAATCCTCAGTCTGCAGATCTGTCCAGTGGTGAATCAGAGATGGAATCTTCCGATGAGGAGGGTGACGCAAGCACAAAAAGGTCTGGACAAAAGCGTGCCAGGCGTGAGGCCATTGTTGGCCCAGCTATTGATAAAGGTGTGGCTCATGAGTCTGTTGGAGTAAAACCAGCCACCTTGGTTCCAAAAGAAATCCCTGTGATAAAAAAGAACCATGTGTTAAAGATAAACATTGTCCCCAAAGCAACACTAAATAAACATAGAGATGATGAGACAACACAAGAGTTGCCAGAGCCAGAAAAAGATGTTCCAGATCCTAGCAAATTTTTGACTCCAGATGAATTAGAGAAAGGAAAGTTGCCTCCTGAGGAAATCTTATCCCTTCCAATGTTTAAGAATTATACAGCTGGAAATCCTGCTCCTGTGTTGTATGTTAAGAATTTGGCAAAAGATGTGGTTGCTGATGATTTCTATTATATATTTGGGTCCTTATTTGGAAGTGTTGAGGCTGCTAAGTCAGGTCTTCAAGTCAAACTAATGCAGGAAGGACGAATGAGGGGTCAAGCATTCCTGACATTCCCCTCTGTTGAATTGGCTCATCGTGCTCTGAATCGGGTGAATGGATATGTATTAAAAGGAAAGCCAATGATTATACAGTTTGGTCGAAATCCTGCTGCTGGTAAGGCTTGA 1143 0.4296 MVASQAQRQLHGLRFLGKVLSAERASKLTGNGENSSGDQLGKDSKTSMLKNANVGKPVDGDTKSRGLPIPEPIADRLGVNYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPLPPTVTINPQSADLSSGESEMESSDEEGDASTKRSGQKRARREAIVGPAIDKGVAHESVGVKPATLVPKEIPVIKKNHVLKINIVPKATLNKHRDDETTQELPEPEKDVPDPSKFLTPDELEKGKLPPEEILSLPMFKNYTAGNPAPVLYVKNLAKDVVADDFYYIFGSLFGSVEAAKSGLQVKLMQEGRMRGQAFLTFPSVELAHRALNRVNGYVLKGKPMIIQFGRNPAAGKA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01307 380 SMART rrm1_1 293 370 IPR000504 GO:0003723
Viun1g01307 380 MobiDBLite consensus disorder prediction 171 191 - -
Viun1g01307 380 MobiDBLite consensus disorder prediction 150 194 - -
Viun1g01307 380 MobiDBLite consensus disorder prediction 27 51 - -
Viun1g01307 380 Gene3D - 287 379 IPR012677 -
Viun1g01307 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 366 IPR000504 GO:0003723
Viun1g01307 380 MobiDBLite consensus disorder prediction 236 267 - -
Viun1g01307 380 SUPERFAMILY RNA-binding domain, RBD 271 375 IPR035979 GO:0003676
Viun1g01307 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 374 IPR000504 GO:0003723
Viun1g01307 380 CDD RRM2_RBM40_like 293 372 - -
Viun1g01307 380 PANTHER UNCHARACTERIZED 2 377 IPR045164 -
Viun1g01307 380 MobiDBLite consensus disorder prediction 27 65 - -
Viun1g01307 380 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 287 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01307 Viun-Chr1 24123061 24165285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01307 294 370 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 1.65e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01307 K13157 - gmx:100818499 652.899