Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01300 ATGGCTTACGATTCTTCCCCTCATGGCCGTGTGCATCAATTTGTGTTAGAGGGCACAGAATCAAAGCCTTTGGACGTGGAATCAGCAGAATCGGTGACCCTTTTGATTAAGCACCTACCAGAAGCCATTCCTCATGACACCCTTTCTAGAATCTTCACAAATTTCGGTGCTTTCTCGGTGCGCCCTTGCTCTACTGCCAGGTTGAAAAATTGTGCTTTTGCGGATTTCAAAAATGAGATGGTGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGATTTCTTGGTAAGGTCTTGTCAGCAGAGAGAGCGAGTAAGCTAACTGGTAATGGTGAAAATAGTAGTGGTGATCAGCTTGGTAAGGACTCTAAAACATCAATGCTGAAGAATGCAAATGTAGGCAAACCTGTTGACGGAGATACAAAATCAAGAGGCCTCCCTATTCCCGAGCCAATTGCTGATAGACTTGGTGTCAATTATCCTTTTCCTCCCCATCTTGAGTATGCTTACCCTCCACCTGATGGAAATATATTAACGAATATTGTGAATGCTCTAATTGCTGTTCCTCGCTTTTACACTCAGGTTCTGCACTTGATGAACAAAATGAACATCCCTGCTCCATTTCGTATGGCACTGCCCACACCTCCATTACCTCCAGAGGTACCAGCACCACTTCCTCCTACTGTAACTATAAATCCTCAGTCTGCAGATCTGTCCAGTGGTGAATCAGAGATGGAATCTTCCGATGAGGAGGGTGACGCAAGCACAAAAAGGTCTGGACAAAAGCGTGCCAGGCGTGAGGCCATTGTTGGCCCAGCTATTGATAAAGGTGTGGCTCATGAGTCTGTTGGAGTAAAACCAGCCACCTTGGTTCCAAAAGAAATCCCTGTGATAAAAAAGAACCATGTGTTAAAGATAAACATTGTCCCCAAAGCAACACTAAATAAACATAGAGATGATGAGACAACACAAGAGTTGCCAGAGCCAGAAAAAGATGTTCCAGATCCTAGCAAATTTTTGACTCCAGATGAATTAGAGAAAGGAAAGTTGCCTCCTGAGGAAATCTTATCCCTTCCAATGTTTAAGAATTATACAGCTGGAAATCCTGCTCCTGTGTTGTATGTTAAGAATTTGGCAAAAGATGTGGTTGCTGATGATTTCTATTATATATTTGGGTCCTTATTTGGAAGTGTTGAGGCTGCTAAGTCAGGTCTTCAAGTCAAACTAATGCAGGAAGGACGAATGAGGGGTCAAGCATTCCTGACATTCCCCTCTGTTGAATTGGCTCATCGTGCTCTGAATCGGGTGAATGGATATGTATTAAAAGGAAAGCCAATGATTATACAGTTTGGTCGAAATCCTGCTGCTGGTAAGGCTTGA 1380 0.4348 MAYDSSPHGRVHQFVLEGTESKPLDVESAESVTLLIKHLPEAIPHDTLSRIFTNFGAFSVRPCSTARLKNCAFADFKNEMVASQAQRQLHGLRFLGKVLSAERASKLTGNGENSSGDQLGKDSKTSMLKNANVGKPVDGDTKSRGLPIPEPIADRLGVNYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPLPPTVTINPQSADLSSGESEMESSDEEGDASTKRSGQKRARREAIVGPAIDKGVAHESVGVKPATLVPKEIPVIKKNHVLKINIVPKATLNKHRDDETTQELPEPEKDVPDPSKFLTPDELEKGKLPPEEILSLPMFKNYTAGNPAPVLYVKNLAKDVVADDFYYIFGSLFGSVEAAKSGLQVKLMQEGRMRGQAFLTFPSVELAHRALNRVNGYVLKGKPMIIQFGRNPAAGKA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01300 459 MobiDBLite consensus disorder prediction 106 130 - -
Viun1g01300 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Viun1g01300 459 MobiDBLite consensus disorder prediction 315 346 - -
Viun1g01300 459 SMART rrm1_1 372 449 IPR000504 GO:0003723
Viun1g01300 459 SMART rrm1_1 33 102 IPR000504 GO:0003723
Viun1g01300 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 453 IPR000504 GO:0003723
Viun1g01300 459 PANTHER UNCHARACTERIZED 27 456 IPR045164 -
Viun1g01300 459 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 366 459 - -
Viun1g01300 459 SUPERFAMILY RNA-binding domain, RBD 31 453 IPR035979 GO:0003676
Viun1g01300 459 MobiDBLite consensus disorder prediction 106 146 - -
Viun1g01300 459 Gene3D - 9 113 IPR012677 -
Viun1g01300 459 Gene3D - 366 458 IPR012677 -
Viun1g01300 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 99 IPR000504 GO:0003723
Viun1g01300 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 445 IPR000504 GO:0003723
Viun1g01300 459 MobiDBLite consensus disorder prediction 229 273 - -
Viun1g01300 459 MobiDBLite consensus disorder prediction 250 270 - -
Viun1g01300 459 CDD RRM2_RBM40_like 372 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01300 Viun-Chr1 24123060 24165285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01300 373 449 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 2.65e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01300 K13157 - gmx:100814307 765.377