Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01298 ATGGAGGAGCCTATTGTGTTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCCACCGATGAGGAGATAATTACTCATTATCTGACTGAGAAGGTGAAGGATAGTAGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAACAAGTGCGAGCCTTGGGATTTGCCGAAGAAAGCGAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGAAAGTATCCAACTGGTATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACCGGAAAAGATAAGGAGATTTACAAAGGGAAAGGAAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCCAAGGGTGAGAAAACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAATCTTCCTAAGGCAGCAAAGGACGAATGGGTGGTGTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAATCCTCAATTCCTGGTCTTCTGAGGATAAACTCTATTGGCGATGATCTTCTTGATTATTCTTCACTTCCACCTCTCATGGATCCTCCTTATGGCAACACTAACCCAATTTCATCAACTAAATCACAATCAGAGGGCTATTATCTCCCCAGTTTCTCCATCAACAACCACCACCAGCTTCTCATCAAGCCAGAAGACCACCACAGAAGCTATGAGATTAATCCCACAATCAGTTACACCTCCAACCAACCCAATCTCACCAACAACGTTAACCCAATTGGAAACAACACACTCTCCTCACAACCCTCCAACATCTTCTCTGATTACTACGTGCACCAAAACAGGATCAGAAATTCCATCATGCCCAGTAGTATTGAAGCCTCGGGTTTCGGTAGCAACCACGATCAAGCTATCCTTAGAGCATTTGCAGCCAAGAACAACGAGCACTTGCAAGATGGAACAATTCTCCTGGAGAAACAGTGCAAGATGGAACAATTCTCCTCTAACCACTCGCAAGACACGGGGTTGAGCAACGACAGAAACACGGAAACATCCTCGGTGGTTTCGAAGCAGGACAACATGGGAAGAAATCGGACATTGTACGAGGATCTTGAAGGTCCTTCTTCAGTTGCACCTCTCTCAGATTTGGAATGTCTGCAGTGGGATGACTACTGA 1191 0.45 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITHYLTEKVKDSSFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNPISSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRSYEINPTISYTSNQPNLTNNVNPIGNNTLSSQPSNIFSDYYVHQNRIRNSIMPSSIEASGFGSNHDQAILRAFAAKNNEHLQDGTILLEKQCKMEQFSSNHSQDTGLSNDRNTETSSVVSKQDNMGRNRTLYEDLEGPSSVAPLSDLECLQWDDY 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01298 396 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Viun1g01298 396 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Viun1g01298 396 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Viun1g01298 396 MobiDBLite consensus disorder prediction 338 367 - -
Viun1g01298 396 FunFam NAC domain-containing protein 100-like 25 171 - -
Viun1g01298 396 MobiDBLite consensus disorder prediction 338 368 - -
Viun1g01298 396 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Viun1g01298 396 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01298 Viun-Chr1 24102998 24104991 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01298 1 203 NAC Transcription Factor Family AT5G18270 74.528 1.82e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g01298 NAM 4.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01298 - - aprc:113861501 672.93