Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01294 ATGGCGACAAAATCCCACAACCATAAAATCCCATCTCTTCTCCCCACCCCAAAAATTTCAATCCTCTCTTTCCCTCTTCTTTTACCCATTTCTCTTCTTCTCCACATAATGGGAAGCCCTCAATCCAATTTGCCACCTGGTTTTAGGTTCCACCCAACAGATGAAGAACTCATTCTTCACTACCTTAGCAAAAGGGTTGCATCCATACCCTTACCCGTTTCCATCATTGCCGAGGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAGGCAACGTTCGGGGAGAAAGAATGGTACTTTTTCAGTCCCAGAGACCGGAAGTACCCAAATGGTGCAAGGCCAAACAGAGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTCACATCATTGCAGGGTGGAGCAGTTCAAGAGAACATTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGTAGACCCCCAAAGGGTGTCAAAACCAATTGGATCATGCATGAATATCGCCTTGTAGATAACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGATTGGGTGTTGTGTCGGATTTACAAGAAATCCAAACATGCTCTAACTTCAACTGAGGCAGGAATAGGAGTTGGTGAGGTGGATCAAGCAGAGGAACAGCTATTCAATGACACCCTTTTGCCAATCTTAAAATCTCCGACACCTCCTCCTCAGAACACATTGATGTCTCAAAAATCTGTCTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCTGTGCTCAGCAGTTTCTTGTCTGAGAACCATTCCAACCCACCAGGGATTGGATCAAGTGCAGGCTTCAACACTGAGAATTTGGAACACCAATCTTCTCCGATCAACACCCCCAACAATGGCTACACGTTTCAGAAGAACACCCAATTCAACCCTTCACTCTCCAACATGGAAAACATGAGGCCGAAGCGCCAATTTTCAAGCATTGATGATGAAACTCTGTACCCATCGAAGAAATACCTGAGTTCCTCTTGCAACTTTCCTTCCAACATCAACCCCCAGTACGAGAATCCACAATGGAACTACCTCGTCAAACAGTCTTTGCTGAATCAGCGGTTACTGCTTGGTCCTCAGCTTCAATTTCAAGGATAA 1161 0.4539 MATKSHNHKIPSLLPTPKISILSFPLLLPISLLLHIMGSPQSNLPPGFRFHPTDEELILHYLSKRVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGAVQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEAGIGVGEVDQAEEQLFNDTLLPILKSPTPPPQNTLMSQKSVSFSNLLDAMDYSVLSSFLSENHSNPPGIGSSAGFNTENLEHQSSPINTPNNGYTFQKNTQFNPSLSNMENMRPKRQFSSIDDETLYPSKKYLSSSCNFPSNINPQYENPQWNYLVKQSLLNQRLLLGPQLQFQG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01294 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 42 303 - -
Viun1g01294 386 Pfam No apical meristem (NAM) protein 45 175 IPR003441 GO:0003677|GO:0006355
Viun1g01294 386 FunFam NAC transcription factor 56 53 207 - -
Viun1g01294 386 ProSiteProfiles NAC domain profile. 44 202 IPR003441 GO:0003677|GO:0006355
Viun1g01294 386 SUPERFAMILY NAC domain 38 202 IPR036093 GO:0003677|GO:0006355
Viun1g01294 386 Gene3D NAC domain 53 207 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01294 Viun-Chr1 24039970 24041860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01294 36 386 NAC Transcription Factor Family AT3G04070 51.532 1.66e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g01294 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01294 - - vun:114194335 762.681