Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01247 ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCGGAGCCGCACCAGACGGCATGGGGCGGGAGGTACCTCGGCGTGCGGCGGAGGCCGTGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCCACCAAGGAGCGGCACTGGCTGGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACCGAGCCGCACGTGCCATGCGCGGCTCACGTGCGCGCACCAACTTCGTCTACGCCGACACCACTCCCGGCTCATCCCTCACCCCCATCATCTCCCCCGACCAACAACCCCTCCCTCAACCCGACCCGGTTCTGACCCTCGACCCGTTTTCCCTCCTGGGGTTCCCCTCCGGTTCCTCCTCCTACGATGAAAATGCCTCCGCCAACGTGGCAGCAGCTTCCCACTTCAGCCAACCACCGTTTTTCCCAAACAATAATAACATTAATTATTACAATAATAACAATGATAATGATAACAGTGGGAGCACGGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCCATGGGTTACGAGATGGAACAACAGAGTGATGGATTTTATTGGGACGCTAGTTCAATGTTCGGTGCAATGTCAACAGTGTCAGAGAATGTTTGTGCAGAGTCTCAAGTTTTTGAGTTGGGGAGCTCCTCCTACTTCTTCTGA 696 0.5704 MNPRTTSSSSKTKKKQTAPEPHQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSLTPIISPDQQPLPQPDPVLTLDPFSLLGFPSGSSSYDENASANVAAASHFSQPPFFPNNNNINYYNNNNDNDNSGSTVELPPLPPDITSSMGYEMEQQSDGFYWDASSMFGAMSTVSENVCAESQVFELGSSSYFF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01247 231 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Viun1g01247 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 147 - -
Viun1g01247 231 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Viun1g01247 231 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Viun1g01247 231 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Viun1g01247 231 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Viun1g01247 231 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Viun1g01247 231 MobiDBLite consensus disorder prediction 1 29 - -
Viun1g01247 231 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Viun1g01247 231 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Viun1g01247 231 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01247 Viun-Chr1 23047161 23048265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01247 7 185 AP2-EREBP Transcription Factor Family AT5G13910 49.206 1.28e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g01247 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01247 K09286 - gmx:100792421 244.973