Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01245 ATGCAAATTCTAAACCTTTTTCTTCTGCAGCCGCAACTCACTCCTTCTTTAGGGTTTTTAGCTCTTCCAATTTCTTTGGCCAACATGGTTCTTCAAAATGATATTGATTTACTAAATCCTCCCGCTGAGATTGAGAAGAGGAAACACAAACTGAAGCGTCTTGTTCAGTCCCCAAATTCTTTCTTCATGGATGTTAAGTGTCAGGGTTGCTTTAACATAACGACTGTGTTTAGTCACTCCCAGACTGTTGTTGTATGTGGGAACTGCCAGACTGTGTTGTGCCAGCCAACTGGTGGACGGGCAAGATTAACTGAGGGATGCTCTTTTAGGAAGAAGGGAGATTGA 345 0.4261 MQILNLFLLQPQLTPSLGFLALPISLANMVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01245 114 ProSitePatterns Ribosomal protein S27e signature. 66 98 IPR000592 GO:0003735|GO:0005840|GO:0006412
Viun1g01245 114 FunFam 40S ribosomal protein S27 29 114 - -
Viun1g01245 114 Hamap 30S ribosomal protein S27e [rps27e]. 52 112 IPR000592 GO:0003735|GO:0005840|GO:0006412
Viun1g01245 114 Pfam Ribosomal protein S27 58 112 IPR000592 GO:0003735|GO:0005840|GO:0006412
Viun1g01245 114 Gene3D - 33 113 IPR023407 -
Viun1g01245 114 SUPERFAMILY Zn-binding ribosomal proteins 58 112 IPR011332 GO:0006412
Viun1g01245 114 PANTHER 40S RIBOSOMAL PROTEIN S27 25 114 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01245 Viun-Chr1 22878682 22879960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01245 29 114 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 2.11e-59 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01245 K02978 - minc:123230388 193.741