Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01237 ATGTCAAGTACTCTTGCAGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGCTATACTTATATGGTTTTGTTTGTCTCGTCAGAGGAATGTTTCTAGAACTTCAGAGACAGGGTCATCTGATCCTTCACAAGTGGGAAGACATGGTGCAATTGAGTTGCCTATACGAGATACCAGGCGTTTTGAGATGGAAGAATTATCACTGGCCACAAAAAGTTTCAGTGACAAAAATTTGATTGGAGAAGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAACGTCGTGGACTCGCTAGTCAGGAATTTGTGGATGAGGTACGTTATCTCTCATCCATTCACCACCGGAATCTTGTCACTCTTTTAGGCTACTGTCAGGAGAACAGTCTTCAGTTTCTTATATATGAATATGTGCCAAATGGAAGCGTCTCCAGTCACTTGTATGGCAGTGGTCAACAATCACAAGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTCTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACCGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTGGCAGATGCTGGACTCCGCAACTTTTTGGGGAGAGTTGACACTGCAGGCTCCTCTTCTCAAGTGCCAACAGATGAAATATTCCTTGCATCAGAGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGCGATGTATACAGCTTTGGGGTATTTTTGCTGGAATTGTTAAGCGGGAAAGAAGCAACAGCATCACCATTTCCAGACTCTAATCAGAATCTGGTTGAATGGGTGGTAAGCAATGAAGACCGTGGCATGATGTCTTACACCATTGATCGGAGATTGGAGAGTAGTTTTACAGCTGAAGGATTGGAAGATTACATCATGCTCATGATCAGATGCTTAGACCCTTCAAGTGAGAGAAGACCTGCCATGAGCTATGTGGAAATGGAACTTGATAGGATCCTAGAGAAGGAAATGAACTTGACAACAATCATGGGAGAAGGAACCCCAACTGTGACTCTTGGAAGCCAATTATTCAAATCAACAACATGA 1137 0.4301 MSSTLAAIFGGAAGAVALVGIAILIWFCLSRQRNVSRTSETGSSDPSQVGRHGAIELPIRDTRRFEMEELSLATKSFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGLASQEFVDEVRYLSSIHHRNLVTLLGYCQENSLQFLIYEYVPNGSVSSHLYGSGQQSQEKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLRNFLGRVDTAGSSSQVPTDEIFLASEVREFRRFSEKSDVYSFGVFLLELLSGKEATASPFPDSNQNLVEWVVSNEDRGMMSYTIDRRLESSFTAEGLEDYIMLMIRCLDPSSERRPAMSYVEMELDRILEKEMNLTTIMGEGTPTVTLGSQLFKSTT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01237 378 SUPERFAMILY Protein kinase-like (PK-like) 58 343 IPR011009 -
Viun1g01237 378 ProSiteProfiles Protein kinase domain profile. 77 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01237 378 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Viun1g01237 378 Pfam Protein tyrosine and serine/threonine kinase 81 345 IPR001245 GO:0004672|GO:0006468
Viun1g01237 378 Gene3D Phosphorylase Kinase; domain 1 43 149 - -
Viun1g01237 378 Gene3D Transferase(Phosphotransferase) domain 1 150 363 - -
Viun1g01237 378 FunFam Protein kinase superfamily protein 150 363 - -
Viun1g01237 378 FunFam Protein kinase superfamily protein 42 149 - -
Viun1g01237 378 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 13 355 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01237 Viun-Chr1 22686818 22691087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01237 20 351 Receptor kinase-like Gene Family AT1G30570 35.165 4.48e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Viun1g01237 PK_Tyr_Ser-Thr 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01237 - - gmx:100305436 677.167