Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01223 AAGACTTCTACAGAAGAACCTTTCATAGAATTGAACAAGGTGGATCGAAGGCATGGAAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAATAGGGAAGGTTTCAACTTCCCTAGCCAACAAGGGGAGGAAGAACCTTCTTCATTCCCCTTTGTTCAACATCCAATCAATACTGCAGATGATAGCACCCCTTCTACATATGGCCAAATACCCACTTCTACCTTGATTGAGACACAGGACCCATCTCAGCACCCTTTAAATCAAGGGAGAAAAAGACACTATCGTGGAGTTCGGCAGAGACCGTGGGGGAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGATCCAAAGCAAAGCTCAATTTCCCTGAACACCTTCTTCTTGCTTCAATACCACCTTCTTCACCTTCATCTTCACCTTCACCTCAAACTATTAACACCAATAACAGTTATTATGCTTCTTTTTCTTCACCTCTTGCACCTCATGCACCAACACCATCACCACCACCACCACTTTATCAACCACAACCCTTACCATCACAGGAAGAAGCGTTTCCAAACCTAATGCAGTACGCACAGCTTCTTTGGAGTAGGGACGATGATGATCTACAACGTGTTGCTTCAGGCCTTCACCATGACTCTTTCTACGATTCCAGTTCTTCAACTTTGTTCTCTTCCTCCTCCACTTCTTCTGTTGTGACTGAATCTGATCAACGGATTGGAGGTGACACCAGTGGCTTCAAGGATTCTTGCTTTTCTAGAGGGAGTGATTTTCATGCCAAGAATTGA 873 0.4593 KTSTEEPFIELNKVDRRHGKRPLPSDHASRENREGFNFPSQQGEEEPSSFPFVQHPINTADDSTPSTYGQIPTSTLIETQDPSQHPLNQGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHLLLASIPPSSPSSSPSPQTINTNNSYYASFSSPLAPHAPTPSPPPPLYQPQPLPSQEEAFPNLMQYAQLLWSRDDDDLQRVASGLHHDSFYDSSSSTLFSSSSTSSVVTESDQRIGGDTSGFKDSCFSRGSDFHAKN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01223 290 MobiDBLite consensus disorder prediction 1 101 - -
Viun1g01223 290 MobiDBLite consensus disorder prediction 8 33 - -
Viun1g01223 290 MobiDBLite consensus disorder prediction 246 275 - -
Viun1g01223 290 PANTHER DNA-BINDING DOMAIN 61 230 IPR044808 GO:0003700|GO:0009873
Viun1g01223 290 MobiDBLite consensus disorder prediction 189 205 - -
Viun1g01223 290 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Viun1g01223 290 CDD AP2 94 153 IPR001471 GO:0003700|GO:0006355
Viun1g01223 290 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Viun1g01223 290 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Viun1g01223 290 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Viun1g01223 290 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Viun1g01223 290 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Viun1g01223 290 MobiDBLite consensus disorder prediction 160 179 - -
Viun1g01223 290 MobiDBLite consensus disorder prediction 246 271 - -
Viun1g01223 290 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Viun1g01223 290 MobiDBLite consensus disorder prediction 184 208 - -
Viun1g01223 290 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Viun1g01223 290 MobiDBLite consensus disorder prediction 34 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01223 Viun-Chr1 22472578 22474159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01223 57 185 AP2-EREBP Transcription Factor Family AT5G61890 57.971 1.58e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun1g01223 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01223 - - var:108318772 391.349