Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01212 ATGTCCATCTTGCCCTCACAAACCCAAGCGTCATCTTCGTCCTCTTCATCAGCGCCATCTCCTAACCCTAATCCCCAACATGGCATCGGAAGCCCTCTTCCTCAACAACCTTTCCCTCACCTCTCACCCCCACTCCACCACGCCCTCGGATCTCTCCAGATCTCCGATATCGCAGGTTCATCGACTCAAGCTGCCAGAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGTGACGGTTTCACCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCACGGAGGAAGACGGGCAGGAATGGTTTCTTCTCATAGAAACCAACAAGCTCCTGGGTCCCTGGGTTCTCATGGAAGTACCCCTTTGGCAGGGAGGAAATCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCGATATCCCGTTCTCAACCACGGGGTCCCCCCCCCCCTGCTGCAAGAAGGCATTGGAAGAGGAAGCCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTATTAGATTCGGGAAATTATACTCCTGAGTCGATGGATCCTGATAAAATGTTGCAGTGGGAAGACATTATATGTGTGACATATTTGACCCCCTTCTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTATACAATACTTAATGATGGGTGAAGAGGATCACAAAGGTGATATCTGGAAAAGATGTCCTCTGTGTTTCGTGATGATGTCTGCCAAGGATTTATATACAGTTCACATCACAAATGTTAAACAGTATCAAGTAGGAGAAAATGTTGAGTTCACCTTTTTAACTCGGAAAAAGGACTCATTTACTCTGACAAGTAAAAATAAACAAGAGACAAATATCACATCATTTGGTAATGGACACTTCTGTGATCCCTTTTCAAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGACATTCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCAGATTCTGGTCTTGTTGATGACATGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAACTGGAACAGAGGAAGAGGTATTGGAATGAGCAAAAGTCTAATGACAGTGAAAATTCTAAGCCCATTGATCATGGACATCAGATACAATCCATGGCTACAAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGGTCAAAAACTGCCTCTACTGATTACAGTGACCAAATTAAGGTTTCGATTCTGGAGAAGTCAACTGCTGGAGCCTGTTCTGACCCAACTTTGAATGTGGAGAAAGAACTAATAGAGCAACAAATGAATTTATGTTCTTCATATGAGGAGAAGAATAGTATTCAAAGGCCAGCAGATGATGGTGTTGTTGAAGAAGTGAAGGGAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTCCACCATTACGGGAGCTATGACATGCTTCCACACAGAATAAATGGAAGGATTCTACAATTGGAGACAGTCACTCAGTCTGAGGCCATGAGGAGGCGATATCGATTCCTAAGTCATTTTCCATTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGGCTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAGAGGAAACAACTTGCAAAAAAGGAACGGAAGGAAAAAATAAGGGCTGAAGCTACAGATACCTATTCCCTTCCCATATCATTTAGTAGTCAGCTTACATCTCGTGATGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCATCTATTTCCTCAAGTCCTCCCGTAGCTGGGGAGAGAAAATCCTTCTCGAATGTCACAAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTACACAATAACAATACCACAACTGATTCGTCTGCCCCAACTGGTTCGAGAAACGGGGAGATACAGTCATACTCGAATGTTATATCAAGAGCAGAATCAAATATAAGCTCGAATGCACCAAAGACTAATGAGTTGGGGAAGAAAGGTAAGAAGCCAAATCGAGTTCTTCTATCAACAGCTGGAGGTAGACGTTATTGA 2229 0.4262 MSILPSQTQASSSSSSSAPSPNPNPQHGIGSPLPQQPFPHLSPPLHHALGSLQISDIAGSSTQAARDSGGSSEKVTELGSPSGVTVSPQQNSRTRSRSHGGRRAGMVSSHRNQQAPGSLGSHGSTPLAGRKSQTVNGNYLLNFQYDPISRSQPRGPPXPPAARRHWKRKPYNKDLFLQANYKFMVLDSGNYTPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCIIQYLMMGEEDHKGDIWKRCPLCFVMMSAKDLYTVHITNVKQYQVGENVEFTFLTRKKDSFTLTSKNKQETNITSFGNGHFCDPFSKFTLTSDVDLSVRHSISDLDGWLARADSGLVDDMEKLPYVCAAMQQLEQRKRYWNEQKSNDSENSKPIDHGHQIQSMATNSMDTDDENCSNGSKTASTDYSDQIKVSILEKSTAGACSDPTLNVEKELIEQQMNLCSSYEEKNSIQRPADDGVVEEVKGNDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALAPFMDEIKKRANQRKQLAKKERKEKIRAEATDTYSLPISFSSQLTSRDDPPTFSMDDFEALGNSSISSSPPVAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNTTTDSSAPTGSRNGEIQSYSNVISRAESNISSNAPKTNELGKKGKKPNRVLLSTAGGRRY 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01212 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 315 IPR013083 -
Viun1g01212 743 MobiDBLite consensus disorder prediction 146 165 - -
Viun1g01212 743 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Viun1g01212 743 MobiDBLite consensus disorder prediction 25 41 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 633 650 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 107 132 - -
Viun1g01212 743 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Viun1g01212 743 MobiDBLite consensus disorder prediction 381 425 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 616 650 - -
Viun1g01212 743 Coils Coil 579 603 - -
Viun1g01212 743 SMART ring_2 220 266 IPR001841 -
Viun1g01212 743 SUPERFAMILY RING/U-box 219 271 - -
Viun1g01212 743 Pfam Zinc finger, C3HC4 type (RING finger) 220 266 IPR018957 GO:0046872
Viun1g01212 743 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 54 95 - -
Viun1g01212 743 PANTHER RING FINGER 10 FAMILY MEMBER 63 743 IPR039739 -
Viun1g01212 743 CDD RING-HC_RNF10 218 275 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 669 721 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 1 132 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 381 397 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 398 425 - -
Viun1g01212 743 MobiDBLite consensus disorder prediction 669 743 - -
Viun1g01212 743 FunFam RING finger protein 10 213 281 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01212 117 694 C3H Transcription Factor Family AT3G26730 52.970 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01212 K26979 - gmx:100798764 1204.12