Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01209 ATGATGGAAGGCTACGCGCTTCCACCACCACCCGGTGAAGAGGACGCGCCACCGCCGTCATGGGGTAGGCCCAATTCACAAGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTTCCTTTAAATCCATGCTTCTACAACAACCTCAACCACAACCACAACCACAGCCACAGCCACCACAACTTGACCCTTACTTCAACTTCAACATGAACTCTGCTATTCCCATTCCCTTTGTTCCAACCATGGAATCTTTTCCCCCTCTGGACCCCTTCTCACCATCACTTTCATCATCTCCTTTCTTCAACAACAGCAGCAACACCAGCATGCCCTTTGACCCGGGCTTTGACATGGGCCTGGACAACGGGCTTCACTCTTCGTGCCCCCCTCTTTTCCCCCAGGTTCAGCCGGGCTTCGAGTTTGGAGAACTGGAAGCTCTGACTGCTGCTGCACCTGGGCATGTGCCGTTTATGGAGGGGGCGAAGGTGGAGAACCCTCTTGAGAGGGTGCAGCCGACCCTTTACCGGAAGCGGAGGGGAACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGAGGGAGGCTGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCTGGGTTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGGGAAGTGAGAATGGTGAAGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATCGCTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATTAATGATCTCCATAACGAGCTGGAGTCGACTCCGGCGGGCTCATCGATGCCGCCGTCGGCTTCTACAAGCTTTCAGCCTCTCACCCCCACCCTGCCAACTCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGCCACCTTGCCAAGCCCCAAAAATCAAGCTGCAAAGGTTGAAGTTAGAGCAAGAGAAGGGAGAGCTGTGAACATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTGTCTACCATGAGGGCTTTGGACAACCTCGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTGGATGTGTTTAAAGCTGAGCAATGCAGAGAAGGACAGGATGTGCTACCTGAGCAAATCAAAGCAGTGCTCATGGATTCAGCAGGGTTTGGCATGATGTGA 1308 0.5298 MMEGYALPPPPGEEDAPPPSWGRPNSQEEDIAIALGAPLSFKSMLLQQPQPQPQPQPQPPQLDPYFNFNMNSAIPIPFVPTMESFPPLDPFSPSLSSSPFFNNSSNTSMPFDPGFDMGLDNGLHSSCPPLFPQVQPGFEFGELEALTAAAPGHVPFMEGAKVENPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEREAEEGSSADVDGSGLNYESDENDNGNNGLKGSENGEDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPAGSSMPPSASTSFQPLTPTLPTLPCRVKEELYPATLPSPKNQAAKVEVRAREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLMDSAGFGMM 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01209 435 Coils Coil 286 306 - -
Viun1g01209 435 CDD ACT_UUR-ACR-like 365 406 - -
Viun1g01209 435 Pfam Helix-loop-helix DNA-binding domain 250 292 IPR011598 GO:0046983
Viun1g01209 435 MobiDBLite consensus disorder prediction 190 206 - -
Viun1g01209 435 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 112 432 - -
Viun1g01209 435 Gene3D - 235 307 IPR036638 GO:0046983
Viun1g01209 435 SMART finulus 249 298 IPR011598 GO:0046983
Viun1g01209 435 MobiDBLite consensus disorder prediction 231 254 - -
Viun1g01209 435 MobiDBLite consensus disorder prediction 1 63 - -
Viun1g01209 435 MobiDBLite consensus disorder prediction 190 254 - -
Viun1g01209 435 MobiDBLite consensus disorder prediction 216 230 - -
Viun1g01209 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 316 IPR036638 GO:0046983
Viun1g01209 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Viun1g01209 435 FunFam BHLH transcription factor 239 307 - -
Viun1g01209 435 CDD bHLH_AtAMS_like 246 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01209 Viun-Chr1 22095970 22098704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01209 142 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 65.091 4.58e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g01209 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01209 - - vun:114162308 791.571