Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01189 ATGATGATGGATCAGCGACAGCGAGAGAAACTGCTTCACAAAACCGAGGCCTGTGCCTTCGTGGCAGGTGTTGCTGCCGAGCTTCGACTTGTCGCCGCCCAAGGAGACATCGCCAACACCAACAACGTTAACTCCACCACCACCATCGTATCTCAATCTCACGCCTCGCCTCGGATCCACGACGCCAACCACCTTGGCCTCGTCGCTGCGGTTACCAATCTTGGAACTGTTCACAGGAAGAAGAGGATGCCCAGGCAGCGAAGATCCACCGTCGCCACCTCCTCCACCACCCCCACCTTGTTTCTCCAGATGCACCACTCCGACAACGCTCTCCCCTCCAAGCACCACCACCCTAATTTACCATCTTCAACTCCTTCCGCCTCCTCGCACGTGCCACCCTCCTCTCTCCAGTCCGTTAAACACCCCACTCCTCCCCGGCTCGCCGCACGTGGAATCGATCAAAGAAACTTGAGGTTCCTTTTCAAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTAAGGAGAATGGTGTTGCCCAAGAAAGCAGCAGAGACTTTCCTCCCACCACTGGAATCAAAAGAAGGAATTTTTATGGACATGGAAGACAAAGATGGTACTCGTGTGTGGAATTTCAAGTACAGGTTTTGGCCTAACAACAATAGCAGGATGTACGTGCTTGAAAATACCGGAGATTTTGTCCGCACACATGGCCTTCGATCCGGCGATACCATTATGATTTACCAACAGATTGAAAACAATAACTATGTTATTGAGACGAGAAAAGCTTGGGAAGAAGATGAATCTGTGGGACAAAGTAATGAGACAGTGAACAAGATGTTCCCGAGTGACTTGGAGGTCAACAAACCAGGATGTTTCAACATAAGCTACCCTGCAGGGAATGATGCTGGCATGTCGTACATATATGAGACTACTATCTCAAATGACTCTCCACTTGACTTTCTGGGAGGATCAATGACGAACTTTTCAAGGATTGGACCGGTTGAAACCTTCGGTTCTGTTGAAAATTTGTCCCTTGATGACTTTTATTAA 1050 0.4886 MMMDQRQREKLLHKTEACAFVAGVAAELRLVAAQGDIANTNNVNSTTTIVSQSHASPRIHDANHLGLVAAVTNLGTVHRKKRMPRQRRSTVATSSTTPTLFLQMHHSDNALPSKHHHPNLPSSTPSASSHVPPSSLQSVKHPTPPRLAARGIDQRNLRFLFKKELKNSDVSSLRRMVLPKKAAETFLPPLESKEGIFMDMEDKDGTRVWNFKYRFWPNNNSRMYVLENTGDFVRTHGLRSGDTIMIYQQIENNNYVIETRKAWEEDESVGQSNETVNKMFPSDLEVNKPGCFNISYPAGNDAGMSYIYETTISNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01189 349 CDD B3_DNA 159 261 IPR003340 GO:0003677
Viun1g01189 349 MobiDBLite consensus disorder prediction 116 141 - -
Viun1g01189 349 Pfam B3 DNA binding domain 161 260 IPR003340 GO:0003677
Viun1g01189 349 SUPERFAMILY DNA-binding pseudobarrel domain 159 252 IPR015300 -
Viun1g01189 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 78 274 IPR044800 GO:0003700
Viun1g01189 349 SMART B3_2 161 263 IPR003340 GO:0003677
Viun1g01189 349 Gene3D - 157 277 IPR015300 -
Viun1g01189 349 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677
Viun1g01189 349 MobiDBLite consensus disorder prediction 109 147 - -
Viun1g01189 349 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01189 Viun-Chr1 21524606 21530227 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01189 45 349 B3 DNA Binding Superfamily AT3G26790 45.133 7.21e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun1g01189 B3 4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01189 K09287 - gmx:100783961 435.261