Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01179 ATGCTACTGCTGGGGACCAACTTCTTTAGCGATCCGAAAGGAAATACCATAAATATAGAGTTTAAGGAGGGTCTTTTGGGTCAGAGACAGTTTCGTGGTGTCCAGAGCATTCGGTCTTTTTATAACGTCAACGATGTTTATTATGTGTGTACTGTTTACTGTGGAGACCGATTTTTTCGTATAAGGCTTTTTGATCTGGACTGGAATGAGTTTGACTACCCTGGTACAGCAAGGACTTCTCTTGGATGTAACCCTTTGTCTTCAATAAGGTTTTTCCAAGCGTTTAGGGTGCAGTTTATCCCAGCGACGATGTTGATTACTGTCCCAGATTACTTTCAAATATTCTGTCGGGATAAACTTGCGTTTCATTACGCGATCAAGTTGTATGATCCCCTGTCAAAGATGTTTGAAATATATGTCGATACAGATGAGAATTTGAGGATGGTCCTGTTTGGTTTTAGTAGGTACATTCCATATTATGGGTTGACTGGTCCGTGTTACTTACATTTAAACTATGTAGGAAACAATGTATTTCTTCATAGGATATTCTCGGCTGAAGGAGTAGAAATGGATTATAACATAAATTCGGGCAGTGCTGCAAACACCCAAGTTCCAGTTGCTGCTCCTAATTTTGAGAAAGAATTAAGCAATTATGATGTTAAAGCATCTTCTTTGTATCTGGATTCCAAATTTGCAAAAGAATGCTTGATCAAGGGTCGCAAGAGCTACAGATTGACGAATGACCAAGCTCAATTCTGGGACTGTAAGATACGTTGGACGGCCAGAAGTTCGTATGAGTGTTACTTAACCTGTGGTTGGAAGAAGTTTTGCAAAGAAAACGGATTGGCTGCTGGTGATCGGATAAGATTTGTTGTGGAGGATGAAGAAAAGGGCGTAATCCACATATTGAAGAATTAG 918 0.3987 MLLLGTNFFSDPKGNTINIEFKEGLLGQRQFRGVQSIRSFYNVNDVYYVCTVYCGDRFFRIRLFDLDWNEFDYPGTARTSLGCNPLSSIRFFQAFRVQFIPATMLITVPDYFQIFCRDKLAFHYAIKLYDPLSKMFEIYVDTDENLRMVLFGFSRYIPYYGLTGPCYLHLNYVGNNVFLHRIFSAEGVEMDYNINSGSAANTQVPVAAPNFEKELSNYDVKASSLYLDSKFAKECLIKGRKSYRLTNDQAQFWDCKIRWTARSSYECYLTCGWKKFCKENGLAAGDRIRFVVEDEEKGVIHILKN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01179 305 Gene3D - 192 305 IPR015300 -
Viun1g01179 305 SUPERFAMILY DNA-binding pseudobarrel domain 209 302 IPR015300 -
Viun1g01179 305 SMART B3_2 211 305 IPR003340 GO:0003677
Viun1g01179 305 ProSiteProfiles B3 DNA-binding domain profile. 210 305 IPR003340 GO:0003677
Viun1g01179 305 Pfam B3 DNA binding domain 211 303 IPR003340 GO:0003677
Viun1g01179 305 CDD B3_DNA 209 304 IPR003340 GO:0003677
Viun1g01179 305 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 199 294 IPR039218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01179 Viun-Chr1 21373109 21374411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01179 215 293 REM Transcription Factor Family AT4G31650 32.099 2.73e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun1g01179 B3 6.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01179 - - vun:114180428 638.647