Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01178 ATGCAGTCTGCAACTTTGCTCGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTTTTCTTTCTTCCGAGTTCCTTTTATGAAGTTTCAGTTCAGATGGCAAGGAAATTTGATATGATCAAGGATATTGATGGAAAAAGGGAGACTTTGAAACTTGCTGTCCGAATTGTGGATCTGTGGTTTGTTGAGTCATGGGATTCAAAACGAAATATGGAGATGATTCTGACAGATCAAAAGGGTGATGTTATCCCTGCTATGATTAAGAAGGAAGACATTGCTACGTGGGAAGACAAGGTAAAGGAAAGAGAAAGTTATATAATGCATAACTTCAAAATTCTCAACAACAGAGCTCAATATAGAGTTTGCGACCACCCTTATAAGCTATTGTTTATTGGAGCAACATCTGTACGACGACAACCAATTGCCAGTATTCCTGCAAAAGTTTGGAAGTTCAAGAGTATAAAGGATATCATTGATGGAAACTATTCTGCAGATTTGTTGGTTGATGTCATTGGTGTGGTGGATAATGTGGAGGAGAAACCAAGTTCCAAAAATGTTGTGTTTGACCTAAAGGACTTGAGTGGTGCGTCAATCTGTTGTACTCTTTGGGATTCATATTGTTTGCGTTTGGTTAGTTATTGGAGGGAAAGTCGTGACACAGCTTATCCAGCTATTATTCTTACTCAGGCAAAGATAAAGGCTGCCTCAGGTCCATGGCCGGTGTCATTGTCTAATTGTTGGAATGGATCGAAGTTGTTTATGGGAGATGATATATCAGAACTGATTGAATTTAGGAAGGAATTTTCAAAAACTACTGCTCATGAAATTTTCGAGGAGGGAAGCCAATATAGTGGATCTTCCCAGATTAGTCATGTTGATAGGTTTATGTATAAAACTGTTGTTAAGAGTGTTTCACAGATCCTGACTGTGATAGAGGAGATTTCATGTGTTACTGTTGCACATACACTTAAATTTAATTTAGGAAATCATGGATGGAGTTACTTGGTTTGTAACTTATGCGCAAAAAGAACATATGAAGTTGGTTCTTTTAAGTGTTTGAATTGTGATGGTTATAATGAGTATCCAAAAATGAGGTACAAGCTTGAAATTCAAGTGACTGATGGAAAAAAGGTTGCTAACTTCATGCTTTGGGACCAAGACTGCATCAATTTAATTAGTCTTTCTGCTGGTGACTTGCGAAAGAAAATGATCAAGGATGGTGAGGAGGATCCTAAGTGTTTTCCACAGGATCTAGACGTTCTTTTGGGTTGTACTTTGGCTTTCAAGGTCAAGCCACAAGGAAATAACCGACCTGCTTCAGTAATGAGAGTTTCAACTGATCGTGAAATCATAGGACACATTAGTAGTCTTCTTGGACAAACTGAGGTAATGGAAATTGTTGAAGCTAAGGAAAACTGTTCTGATCAATCAGAGCTTCGTAAGGGCAAGTCCATAGCAATTGAGGTTGGGAAACGTAGGAGTGCCAGTGAATCTGATGTCCATACTCATACTGGGAGTTCTTTAGCATTGGAACTTGCTGAATGTGGTGATAATGCAGCATGCGACTTATCTGCTGATACTGATAGTTCATTAATGTGCCTTTCTAGGACTGCTGATCTTGATCCGGATGTTGTTTTATGTGTGACGCCCAGAAAAAATCTTTCCACTACCAGTGACAATGAAGACATGCAGTATATTCCAGAAAATTTCATGGATTTTGATCTTTTGGAGGACCTCCCATTAGCCCAATTGTCAGCTACGAAGACAATGAAGATTATCAAGAAGGAGAAATGA 1863 0.3913 MQSATLLVPSGTSDKIGTIQRRLAWPLRKDDTHKSRNGPNFFFFLPSSFYEVSVQMARKFDMIKDIDGKRETLKLAVRIVDLWFVESWDSKRNMEMILTDQKGDVIPAMIKKEDIATWEDKVKERESYIMHNFKILNNRAQYRVCDHPYKLLFIGATSVRRQPIASIPAKVWKFKSIKDIIDGNYSADLLVDVIGVVDNVEEKPSSKNVVFDLKDLSGASICCTLWDSYCLRLVSYWRESRDTAYPAIILTQAKIKAASGPWPVSLSNCWNGSKLFMGDDISELIEFRKEFSKTTAHEIFEEGSQYSGSSQISHVDRFMYKTVVKSVSQILTVIEEISCVTVAHTLKFNLGNHGWSYLVCNLCAKRTYEVGSFKCLNCDGYNEYPKMRYKLEIQVTDGKKVANFMLWDQDCINLISLSAGDLRKKMIKDGEEDPKCFPQDLDVLLGCTLAFKVKPQGNNRPASVMRVSTDREIIGHISSLLGQTEVMEIVEAKENCSDQSELRKGKSIAIEVGKRRSASESDVHTHTGSSLALELAECGDNAACDLSADTDSSLMCLSRTADLDPDVVLCVTPRKNLSTTSDNEDMQYIPENFMDFDLLEDLPLAQLSATKTMKIIKKEK 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01178 620 CDD RPA1_DBD_A_like 74 159 - -
Viun1g01178 620 Pfam Domain of unknown function DUF223 95 187 IPR003871 -
Viun1g01178 620 CDD RPA1_DBD_B_like 192 289 - -
Viun1g01178 620 SUPERFAMILY Nucleic acid-binding proteins 338 459 IPR012340 -
Viun1g01178 620 Gene3D - 58 161 IPR012340 -
Viun1g01178 620 Gene3D - 166 302 IPR012340 -
Viun1g01178 620 SUPERFAMILY Nucleic acid-binding proteins 173 292 IPR012340 -
Viun1g01178 620 Gene3D - 304 479 IPR012340 -
Viun1g01178 620 SUPERFAMILY Nucleic acid-binding proteins 59 160 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01178 Viun-Chr1 21359277 21365752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01178 165 397 Core DNA Replication Machinery Family AT2G06510 26.641 2.05e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01178 - - vun:114189569 1251.11