Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01176 ATGTTGCTCTGCGATTACTGTCACACCAAACCCGCCTTACTCTTCTGCCGACCCGACTCCGCCAAACTCTGTCTCCTCTGCGACCACCACGTGCACGCCGCTAACGCTCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACACCTGCAACACCGACACCGCCACCGTCCGCTGCTCCGCCCACAATCTCATCCTCTGCCACGCCTGCGACCTCGACGCTCACGCCCACGCCCCGGCCTCCCTCCACCACCGCCACCGCCTCCTTGGCCTCTCTGGCTGCCCCTCCCTCCCTGAGATTGCCTCCGCCCTCGGCCTCGATCTCCGCCTGCGCCACGCCAACTGCCGTGACGAGGTCTACCAGCAGGTCCTCGAAGTCGCGCGCACCAGGAACGAGAACGACTTTGCGCCTGCCGAGACTCAGGAATTCAGGTTGGAGCCTGCAAACGACGTTGTCGACGAGATGTTGCTGCAGCAGACGCCGTTCACGTCCTTGCTCGGGATGCCTGATTCCCAATCCGAATTCGACGCCGCCAAAACTAACGATAACGGTTACGGAGTCGAAGCTGGAGATCTTCTCTGGACTTTTGATCCCAACTATCAGTCTCCTCAGGTGTGGGATTTTGAATTACAGAAATCAAGAGGTTGTGATGAACCAAGAGTGGTGACATTTGATGGTCTAGAAGTTCCAACATCATTTCAAGATATGCACAATATAAATTACTCGACCACCGGTGATGATATTCTATCAAGAAATAACCAATCGGATCAGTCATCATCAAGCCACGCAAAGAAGAAAGAAGAAAGCAACAAGAAAGCCAGAGGTGGGTTGTCATCAGAGTCCAAATTGCTAGAATCAATACCGTATAGTGGCACCAACAAGGTGGTTGTCATGGAGCATCTTGTGGGTGGGAATGCAAATGTTAACACCTTAAAAGCCAGGGTTAGCTTGGAAGAGTTGGCTAAGAATAGAGGTAATGCAATGTTACGCTACAAGGAGAAGAAGAAATCTCGAAGGTACGATAAACACATTCGCTATGAATCAAGAAAGGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCAGGATGA 1119 0.5237 MLLCDYCHTKPALLFCRPDSAKLCLLCDHHVHAANALSLKHVRFQICDTCNTDTATVRCSAHNLILCHACDLDAHAHAPASLHHRHRLLGLSGCPSLPEIASALGLDLRLRHANCRDEVYQQVLEVARTRNENDFAPAETQEFRLEPANDVVDEMLLQQTPFTSLLGMPDSQSEFDAAKTNDNGYGVEAGDLLWTFDPNYQSPQVWDFELQKSRGCDEPRVVTFDGLEVPTSFQDMHNINYSTTGDDILSRNNQSDQSSSSHAKKKEESNKKARGGLSSESKLLESIPYSGTNKVVVMEHLVGGNANVNTLKARVSLEELAKNRGNAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKASDVQAG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01176 372 MobiDBLite consensus disorder prediction 244 259 - -
Viun1g01176 372 MobiDBLite consensus disorder prediction 260 275 - -
Viun1g01176 372 CDD Bbox1_BBX-like 3 46 - -
Viun1g01176 372 MobiDBLite consensus disorder prediction 333 359 - -
Viun1g01176 372 MobiDBLite consensus disorder prediction 244 279 - -
Viun1g01176 372 ProSiteProfiles Zinc finger B-box type profile. 42 91 IPR000315 GO:0008270
Viun1g01176 372 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Viun1g01176 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 367 - -
Viun1g01176 372 ProSiteProfiles CCT domain profile. 324 366 IPR010402 GO:0005515
Viun1g01176 372 SMART bboxneu5 1 46 IPR000315 GO:0008270
Viun1g01176 372 MobiDBLite consensus disorder prediction 344 359 - -
Viun1g01176 372 Pfam CCT motif 324 366 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01176 Viun-Chr1 21327422 21331348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01176 1 368 C2C2-CO-like Transcription Factor Family AT2G33500 34.140 1.65e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun1g01176 CCT 2.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01176 - - vum:124830018 614.379