Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01152 ATGGCAGACCCAACGGCCATGTACGAGTTCCTCAAGCAGCCCACAAACGGTGGTGTAAAGAGACCACTGCCACCACCTTCCACCACTGCCAACACTACCACCCCTACCACCGCAGCCACCACACGCACCTTCCAATGCCATTTCTGCCACCGCAAGTTCTACACCTCGCAAGCCCTCGGCGGCCACCAAAACGCACACAAGCTGGAGCGAGCAGCCGCGAGGAGGCAAACCAACGGGCTTCTCCCGCCGCCCCCGCTGCCGCTGGAGCCTGCCCTCAAGCAAAGCGAGCCCAGGCCCAGGCCCATGCTGGAGCCACTGGAGCCCTCCACCGGGCTCTTCTTCCACCCTCCCTACTGGCTCGATGTGGAGCCCCTGCAGTTCCAAGCCACCCACCCTTACGTGACCGCCGCCACCCTCCCCGTTCCGTTCCACGCCGCGTCTTCCACCGTACCCCAACAACAGCAGGTCCTTTCCCACAATGTCGACGCCTCCGACCACGTCAACCTCGACCTCACTCTCCGCTTGTGA 528 0.6364 MADPTAMYEFLKQPTNGGVKRPLPPPSTTANTTTPTTAATTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPALKQSEPRPRPMLEPLEPSTGLFFHPPYWLDVEPLQFQATHPYVTAATLPVPFHAASSTVPQQQQVLSHNVDASDHVNLDLTLRL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01152 175 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Viun1g01152 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Viun1g01152 175 MobiDBLite consensus disorder prediction 11 37 - -
Viun1g01152 175 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 78 IPR044246 GO:0009788
Viun1g01152 175 Gene3D Classic Zinc Finger 27 81 - -
Viun1g01152 175 MobiDBLite consensus disorder prediction 77 100 - -
Viun1g01152 175 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
Viun1g01152 175 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01152 Viun-Chr1 21026258 21026785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01152 39 86 C2H2 Transcription Factor Family AT5G14010 66.667 5.45e-15 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g01152 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01152 - - vra:106758350 295.819