Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01144 ATGCTTTCCCTTCTACGCCATCCCAACCTGGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAATACATGGCTTTGGGATCCCTAGAATCTCATCTTCATGATGTTTCTCCTGATGAAGAGCCACTTGATTGGAATACCCGAATGATAATAGCTTGTGGGTCAGCAAAAGGGCTACATTATCTGCACGATGAAGCAAAGCCTTCTGTTATATACAGGGATCTTAAAGCATCCAATATACTATTGAATGAAGATTTCCTTCCAAAACTTTCTGATTTCGGGCTTGCAAAATTTGGTCCAACCGGAGATCAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACGAAGAGATCTGACATATACAGTTTTGGGGTTGTGTTACTGGAACTAATTACTGGACGCAAAGCATATGATGATAACCGTGGCCCTGAAAAGCTTCTGGTAGACTGGGCACGTCCAATGCTGAGAGACAAAAGGAGTTTCCCAAGATTGGTGGATCCACGGCTTCAAGGGAAGTACCCAGCATCATGTCTACCGATGGTGATTGAATTGACCGCCATGTGTCTTCGTGAAGAGCCACGTCAACGGCCTAATGCAGGTGATATAGTGCAAGCTCTGGAATTCTTGTCATCCAAGCAATACTCCCCAAAAGCGCTCAACACAGTGAACAACACAACTGAGATGGAGAGTGCAGTGTCCCCAAATGAAACAACACCCATTTTTCCAAAAGAATCACTGAGAGAGCGAGCTGTTGCAGAAGCCAAGCTCTGGGGGGAGACATGGAGGCAGAAACGACAAAGCGAGCAAAACAGTCCTAAGGAACCACAGGGGTTGTGA 897 0.4526 MLSLLRHPNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMIIACGSAKGLHYLHDEAKPSVIYRDLKASNILLNEDFLPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTKRSDIYSFGVVLLELITGRKAYDDNRGPEKLLVDWARPMLRDKRSFPRLVDPRLQGKYPASCLPMVIELTAMCLREEPRQRPNAGDIVQALEFLSSKQYSPKALNTVNNTTEMESAVSPNETTPIFPKESLRERAVAEAKLWGETWRQKRQSEQNSPKEPQGL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01144 298 FunFam Serine/threonine-protein kinase PBS1 30 245 - -
Viun1g01144 298 PIRSF TyrPK_CSF1-R 1 43 - -
Viun1g01144 298 PIRSF TyrPK_CSF1-R 36 296 - -
Viun1g01144 298 CDD STKc_IRAK 1 227 - -
Viun1g01144 298 SMART serkin_6 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01144 298 Gene3D Transferase(Phosphotransferase) domain 1 31 253 - -
Viun1g01144 298 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Viun1g01144 298 SUPERFAMILY Protein kinase-like (PK-like) 2 229 IPR011009 -
Viun1g01144 298 Pfam Protein tyrosine and serine/threonine kinase 2 226 IPR001245 GO:0004672|GO:0006468
Viun1g01144 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Viun1g01144 298 PANTHER OS07G0668900 PROTEIN 1 238 - -
Viun1g01144 298 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01144 298 MobiDBLite consensus disorder prediction 278 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01144 Viun-Chr1 20614823 20617712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01144 1 282 Glycoside Hydrolase AT3G07070 54.110 1.01e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun1g01144 PK_Tyr_Ser-Thr 7.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01144 K13430 - gmx:100805675 494.197