Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01142 ATGGGTAGTAGCTGCCCTTGTTTCGGGTCGAGGAAGAAGGGCAAAGAGAAGAGTGTCAAGGGACGGGACGAGGAAAACAAGAATCGCAAATCTGTAAAGAACACCAATGATGTCTCTGAGAGTTCTCCAGGAAATGGACCAGAAGAAAACCCAATAGAGGATGGAGAAAGTTCTCATAAGGCTCGGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAGTTTTAGAGATGAAACCTTTATTGGGCAAGGTGGATTTGGCATTGTTTACAAGGGAATAATTGGGGAAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACAGGTGTGCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATCCCAACCTGGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAATACATGGCTTTGGGATCCCTAGAATCTCATCTTCATGATGTTTCTCCTGATGAAGAGCCACTTGATTGGAATACCCGAATGATAATAGCTTGTGGGTCAGCAAAAGGGCTACATTATCTGCACGATGAAGCAAAGCCTTCTGTTATATACAGGGATCTTAAAGCATCCAATATACTATTGAATGAAGATTTCCTTCCAAAACTTTCTGATTTCGGGCTTGCAAAATTTGGTCCAACCGGAGATCAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACGAAGAGATCTGACATATACAGTTTTGGGGTTGTGTTACTGGAACTAATTACTGGACGCAAAGCATATGATGATAACCGTGGCCCTGAAAAGCTTCTGGTAGACTGGGCACGTCCAATGCTGAGAGACAAAAGGAGTTTCCCAAGATTGGTGGATCCACGGCTTCAAGGGAAGTACCCAGCATCATGTCTACCGATGGTGATTGAATTGACCGCCATGTGTCTTCGTGAAGAGCCACGTCAACGGCCTAATGCAGGTGATATAGTGCAAGCTCTGGAATTCTTGTCATCCAAGCAATACTCCCCAAAAGCGCTCAACACAGTGAACAACACAACTGAGATGGAGAGTGCAGTGTCCCCAAATGAAACAACACCCATTTTTCCAAAAGAATCACTGAGAGAGCGAGCTGTTGCAGAAGCCAAGCTCTGGGGGGAGACATGGAGGCAGAAACGACAAAGCGAGCAAAACAGTCCTAAGGAACCACAGGGGTTGTGA 1263 0.4473 MGSSCPCFGSRKKGKEKSVKGRDEENKNRKSVKNTNDVSESSPGNGPEENPIEDGESSHKARIFTFRELATATKSFRDETFIGQGGFGIVYKGIIGENQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHPNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMIIACGSAKGLHYLHDEAKPSVIYRDLKASNILLNEDFLPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTKRSDIYSFGVVLLELITGRKAYDDNRGPEKLLVDWARPMLRDKRSFPRLVDPRLQGKYPASCLPMVIELTAMCLREEPRQRPNAGDIVQALEFLSSKQYSPKALNTVNNTTEMESAVSPNETTPIFPKESLRERAVAEAKLWGETWRQKRQSEQNSPKEPQGL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01142 420 SMART serkin_6 76 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01142 420 PANTHER OS07G0668900 PROTEIN 24 360 - -
Viun1g01142 420 Gene3D Transferase(Phosphotransferase) domain 1 152 374 - -
Viun1g01142 420 MobiDBLite consensus disorder prediction 1 58 - -
Viun1g01142 420 MobiDBLite consensus disorder prediction 400 420 - -
Viun1g01142 420 Pfam Protein kinase domain 77 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01142 420 Gene3D Phosphorylase Kinase; domain 1 48 151 - -
Viun1g01142 420 CDD STKc_IRAK 82 349 - -
Viun1g01142 420 ProSiteProfiles Protein kinase domain profile. 76 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01142 420 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Viun1g01142 420 SUPERFAMILY Protein kinase-like (PK-like) 55 351 IPR011009 -
Viun1g01142 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Viun1g01142 420 FunFam Serine/threonine-protein kinase PBS1 152 367 - -
Viun1g01142 420 FunFam probable serine/threonine-protein kinase RLCKVII 48 151 - -
Viun1g01142 420 MobiDBLite consensus disorder prediction 10 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01142 Viun-Chr1 20614823 20618994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01142 4 404 Glycoside Hydrolase AT3G07070 51.064 2.29e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun1g01142 Pkinase 6.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01142 K13430 - gmx:100805675 650.203