Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01126 ATGAACAACTACCTCTCACCTTCACATTATATTTATTTTGTTCCATTGCTATGTTTTGAACATCTTAGCACACCACCTACATCATACATATATACCTTGCAACTTTCCCTTGAGGGAACTCAGACCCTTGTCATATTGTGTGAGGGACACCACAGGCTGTTAAGGAAAATGGCTAATGAGAATGGTTTCCAGCAGCTTAGTGTGAAGCTAGGTGAACCAACTCTTGTTCCACCAGCTGAAGAAACAAAGAAGGGTTTGTATTTCCTATCTAACCTTGACCAGAACATTGCAGTGATTGTGAGAACTGTTTATTGCTTCAAAACTGCTGAGAGGGGGAATGAGAAGGCTGTGGAAGTGATCAAGAATGCACTGAAGAAGGTTCTTGTCCACTATTACCCTCTTGCTGGGAGACTCACTATAAGCTCAGAGGGTAAACTCATAGTGGATTGCACAGGGGAAGGTGCCTTGTTTGTGGAGGCTCAAGCAAACTGTTCAATGGAAGAGATTGGTGACATCACAAAACCAGACCCTGGTACTCTTGGTAAGCTGGTTTATGATATTCCTGGAGCAAAACACATTCTTCAGATGCCTCCTTTAGTTGCTCAGGTGACAAAGTTCAAATGTGGAGGCTTTGCTCTTGGGCTGTGCATGAACCACTGCATGTTTGATGGCATTGGTGCAATGGAGTTTGTGAACTCTTGGGGACAAGTGGCCAGAGACTTGCCACTTTCAATCCCTCCAGTGCTTGATAGAAGCATACTAAAGGCAAGAAACCCACCAAAGATAGAGCACCTGCATCAAGAATTTGCTGACATAGAAGACAAATCAAACACTGCTACTTTATACGAAGATGAAATGGTTTACAGGTCCTTCTGTTTTGACCCTGAGAAGCTAAAGGAGCTGAAGAAGAAAGCAATGCAAGATGGGGCTCTTGATGCATGCACAACATTTGAAGTTCTCTCAGCGTTTGTGTGGATAGCAAGAACCAAGGCACTGAAAATGCTACCTGAGCAACAAACAAAGCTTCTTTTTGCTGTTGATGGAAGGGCCAAGTTCAACCCTCCTCTTTCAAAAGGGTACTTTGGAAATGGAATTGTGCTGACAAATTCTGTGTGCCAAGCTGGGGAACTAACACAAAAGCCTCTCTCATTTGCTGTGAGACTCATTCAAGATGCTATCAAGATGGTGACAGATAGCTACATGAGATCAGCCATTGATTACTTTGAGGTGACAAGAGCAAGGCCTTCTCTTGCTTGCACTCTTCTCATCACAACTTGGTCTAGACTTTCCTTTCACACCACTGATTTTGGATGGGGAGACCCTGTGCTTTCAGGGCCAGTGTCTCTTCCAGAGAAGGAAGTGATTTTGTTCCTCTCACATGGCCAAGAGCGAAGAAATATAAATGTGCTTCTGGGTTTGCCTTCTACTGTCATGAAGATTTTCCAAGAGTTGATGCAGATATAA 1464 0.4351 MNNYLSPSHYIYFVPLLCFEHLSTPPTSYIYTLQLSLEGTQTLVILCEGHHRLLRKMANENGFQQLSVKLGEPTLVPPAEETKKGLYFLSNLDQNIAVIVRTVYCFKTAERGNEKAVEVIKNALKKVLVHYYPLAGRLTISSEGKLIVDCTGEGALFVEAQANCSMEEIGDITKPDPGTLGKLVYDIPGAKHILQMPPLVAQVTKFKCGGFALGLCMNHCMFDGIGAMEFVNSWGQVARDLPLSIPPVLDRSILKARNPPKIEHLHQEFADIEDKSNTATLYEDEMVYRSFCFDPEKLKELKKKAMQDGALDACTTFEVLSAFVWIARTKALKMLPEQQTKLLFAVDGRAKFNPPLSKGYFGNGIVLTNSVCQAGELTQKPLSFAVRLIQDAIKMVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLSFHTTDFGWGDPVLSGPVSLPEKEVILFLSHGQERRNINVLLGLPSTVMKIFQELMQI 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01126 487 FunFam Spermidine hydroxycinnamoyl transferase 66 269 - -
Viun1g01126 487 Gene3D - 62 268 IPR023213 -
Viun1g01126 487 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 74 484 - -
Viun1g01126 487 FunFam Tryptamine hydroxycinnamoyl transferase 273 486 - -
Viun1g01126 487 Gene3D - 269 486 IPR023213 -
Viun1g01126 487 Pfam Transferase family 68 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01126 Viun-Chr1 20347656 20349869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01126 66 485 Monolignol Biosynthesis Gene Families AT5G48930 33.793 9.87e-80 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01126 K15400 - gmx:100804504 807.364