Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01117 ATGGATCCCAAGAGCTCAAAGCAGCCAGTGGCACAGGAGGTGGTACCAAACTTTCTCAGTCTTCCCCAACAACAATCGCCACCATCACAACAACAACAACAAGAACAAGGTAGCAATAATAACAACATGGGAGAGAACAAAGGAGGAGAGATGAAGGATTTCCAGATAGTGGTCGGAGAGAAGGATGAGAGCAAGAAGCAGTTGGGTCCGAAGAGGAGTTCGAACAAGGACAGACACACGAAGGTTGAAGGGAGGGGAAGGAGGATAAGGATGCCTGCTCTGTGTGCAGCTAGAATCTTTCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACGATCCAGTGGCTTCTTCAGCAGGCTGAGCCATCGATAATAGCCGCTACTGGGACAGGAACAATCCCAGCATCTGCTTTGGCTGCTGCTGGGAACTCGGTTTCAGCACAAGGGGCCTCTCTTTCATCAGGGTTGCACCAAAAGATTGATGAATTGGGAGGGGCCAATATGGGGTCAGGTAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATGTGGCCACGGGACTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGACATCCTCGGCTCCATCGAATGCCGCCCTAGGCACTGAGAGTTCAAATTACCTGCAAAAGATTGCCTTCCCTGGCTTTGACTTGCCTGCTGCACCCACCAACATGGGTCACATGAGTTTCACCTCAATACTCGGTGCTGCTGGTGCCCACCAGATGCCTGGTTTGGAACTAGGGTTGTCCCAGGATGGCCATATTGGGGTCTTGAATCCACAGGCCTTGAGCCAGATTTATCAGCAGATGGGTCAGGCTAGAGTGCAGCAGCAACAGCATCAACAAACTCCTGCAAAGGATGATTCTCAAGGCTCAGGACAGTAG 933 0.5145 MDPKSSKQPVAQEVVPNFLSLPQQQSPPSQQQQQEQGSNNNNMGENKGGEMKDFQIVVGEKDESKKQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSAQGASLSSGLHQKIDELGGANMGSGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQTSSAPSNAALGTESSNYLQKIAFPGFDLPAAPTNMGHMSFTSILGAAGAHQMPGLELGLSQDGHIGVLNPQALSQIYQQMGQARVQQQQHQQTPAKDDSQGSGQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01117 310 MobiDBLite consensus disorder prediction 1 86 - -
Viun1g01117 310 MobiDBLite consensus disorder prediction 10 46 - -
Viun1g01117 310 MobiDBLite consensus disorder prediction 54 86 - -
Viun1g01117 310 Pfam TCP family transcription factor 74 161 IPR017887 -
Viun1g01117 310 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Viun1g01117 310 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 219 IPR005333 GO:0003700
Viun1g01117 310 MobiDBLite consensus disorder prediction 285 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01117 Viun-Chr1 20086139 20087849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01117 1 310 TCP Transcription Factor Family AT3G27010 52.395 1.43e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun1g01117 TCP 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01117 - - vun:114191990 554.673