Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01075 ATGTGTATTCATTCTTCTCTGTTCCATGAAGTTCGACTGGATCTCTGCTTTCGGGGTGAGGACACTCGCATGAACTTCACAAGCCATCTTCATGAGGCTTTGAAGGAAAAAAAAGTTGAAACCTATATTGACTACCAGCTTGAGAAGGGAGATGAAATTTCACCAGCAGTCTTCAAAGCAATCGAAGATTCTCGTGTGTCTATTGTGATACTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTAGAAGAACTCAGCAAGATTCTAGAATGCCACAGAAACCAAGAACAAATTGTGATTCCAGTGTTTTACAACGTAGACCCATCCCATGTTAGGAAGCAAACAGGGTGCTATGAGCAAAGCTTTGCAACACACGAGGAAGAACTCAGGTGCAACAAATGGAGATCTGCTCTCACTGCAGTAGCCAATTTAGCTGGGTGGGATTCTCGAAACAGGATTGAATCTCAATTCATTAAGGACGTTGTTAAAGATGTTATAGGAAAACTGACTCCTAGATACCCAAACGAACTTAAAGGACTAGTTGGAATTGAGAAAAGTTTTAAACAGATTGAATCATTATTAAAAATTGGTTCAAGTGAAGTTAGAACCGTTGGAATATGGGGCATGGGCGGCATAGGAAAGACCACTCTGGCTATTGCTTTATATGACAAATTGTCTCACGAGTTTGAAGGTCGTTGTGTCCTCACTAATATAAGGGAAAAATCAGACAAGCTCGAAGGTTTACGTGATGAACTTTTGTCGAAGTTGTTAGGGAATAAAATTCATGGGATTGATTATTTTGACATGAGGAGGCTTCAACGTAAAAAGGTTTTCATTGTTCTTGATGATGTGGATACCTCAGAGCAGATAGAAAAGCTAATTCTAGAATACGAGTTTCTCGGACCAGGAAGTAAAGTCATTGTTACAACTAGAAATAAGCAAATACTTAGTCTAGTTGATGAAATATATCAGGTTGAAGAATTAAGCTCATATCACTCTCTTCAACTTTTCTGTTTGACTATATCTGGAGAAAAGCAACCTAAAGATGGATATGAAGATTTATCAAAAAGGGCAATTTTGTACTGCAAAGGTCTTCCTATGGCTTTAAAAGTTTTGGGTTCAAATCTACGCAAAAAAAGTAAAGTGGTATGGGAATGTGAATTGAGAAAACTCCAAAAGATTCCAAATGTTCAAATTCATAATGTGCTAAAATTAAGTTATGAGTGCTTAGATCGATCTCAAAAGGACATCTTTTTAGACATTGTGTGCTTCTTCAATGGATGGGAAAGAGATAGGGTAACATATATTCTGGAGGCTTGCGATTTCTTTGCAGCATCTGGGATAGAAACCCTTTTAGATAAAACTCTCGTAACAATTTCAAATTATAGTCACATAAAAGTGAATGACTTGATACAAAAAATGGGCTGGGAAATTGTTCATCAAGAGTCTATCAAAGATCTTGGAAGGCGAAGTCGATTATGGAAACAGGAGGAAGTGTATGATGTTTTGAAATATAACAAGGGGACTGATTTTGTTGAAGGCATGGTTTTAGATTTGGAGCAATTAGCTGGAGATTTATATTTGAGTTGTGATTCCCTTGCAAAGATGACTAACATGAGAATTCTTAGAATCCACAGACGAAAATGGGGTTGCAGATTTAGTGTGCACCTTCCTGATGGTATTGAGTTGCCTTACAAATTGAGGTACCTTGAGTGGGAAGGATTCTGTCTCAGGTCTTTGCCATCAAACTTTTGTGCTGAACAACTTGTAGAGCTTCACATGTGGAATAGCAAGCTTAAAATGCTTTGGGATGGGGTTCAGAACCTTGTGAATTTAAAGACAATTGACCTTGATGACTCTCGAGACTTGATTGAGATCCCAGACTTGTCTATGGCGGAAAAACTTGAAAGAGTGTCCCTTTATGATTGTGAAAGCTTATGTAAGCTTCATCCATCCATCTCATCTCTTCCCAAACTCAAATATTTGATTTTAAGTGGTTGCAAAGTCATTCAAAGCGTAAATGTTCACTCAAAATCTCTAAATGTACTAAGACTCAGAGGCTGTTCATCTCTCAGTGAATTCTCTGTGACATCAGAGGAGATGACACATTTGGACTTGTCTCAAACCGCTATACGTGAATTGTTGTCACCAATGATATCTCTCCCCAAGCTTACATATTTGTACTTAAGTGGCTGTAGACATATTGAAAACGTTAATCTTCATTTAAGATCTCTCCGTGTGCTAACACTCGTTGGTTGTTCATGTCTCAAAGAATTCTCAGTGGCATCAGATAAATTGACACTATTGGAGTTACCTGACACTGCTATAGGTGTATTGCCATCATCAATTGGTCACTTGTTATCTTTAGAAGAGTTAGACCTACGTGGAACTAATATTGAGTGCTTGCCTGCAAGTATCAAAAGCCTTTCAATGTTAAGAGTGCTTTGGTTAAATGATTGCAAGAAACTGGTATCTGTACAAGAGCTTCCACCATCCTTAAGAGAACTTCATATAAATGATTGTTGGAAACTTGTGTCTCTGCCAGAGCTTCCACCATCAGTGAAAGAGGTGAGTGCCTTTAATTGCCGTTCTCTAGAGGAAAACATCACACAAGAGCTAGTGTTACGACACATGTTACAAAGTTGCATACCCGACAAACATCAACAATATCCTTACAATCCTGTGTATTTTGATGGTGGTTATTTCATCTTTCCGGGAGACCACATCACCGACAATTGTGCGTTTCATGCAACAGAGAGTTCAATAACTATTCCTTCCCTTCCCAGATCTCACTTGTGGGGTTACATTTTTTGCATCATTATTGCCAAGGGACCGATGTCAGATCATCAGTTTTCATGTTCTATCTATCAAGAAGATATATTGGTAGGTTGTGGTCATCGTAGGTTTATAGGCTGCGAAAATTTAATTTCAGATCATGTGTTATTTTTTTATCATGATGTGATCAATTTCGGTGGAACAGATGAAGTGTACGGTCCTTTTAATAGCTTTACATTCATGTTTGAATTTAATGGTGATAAACACACCATAAAAGGGTGTGGGGTCTTTCCCGTATATTTGACATCATCTGGGTTTAAGTTTTGTAATGTTGACTCACAACCAAGAGCAAATGGACCCAAAATTGGAGGCTGTGATAAAGAAAATTTGGAACAACTTTTTGCAGCCAAGAGAAGAAAGACTGCGTGA 3204 0.382 MCIHSSLFHEVRLDLCFRGEDTRMNFTSHLHEALKEKKVETYIDYQLEKGDEISPAVFKAIEDSRVSIVILSENYASSKWCLEELSKILECHRNQEQIVIPVFYNVDPSHVRKQTGCYEQSFATHEEELRCNKWRSALTAVANLAGWDSRNRIESQFIKDVVKDVIGKLTPRYPNELKGLVGIEKSFKQIESLLKIGSSEVRTVGIWGMGGIGKTTLAIALYDKLSHEFEGRCVLTNIREKSDKLEGLRDELLSKLLGNKIHGIDYFDMRRLQRKKVFIVLDDVDTSEQIEKLILEYEFLGPGSKVIVTTRNKQILSLVDEIYQVEELSSYHSLQLFCLTISGEKQPKDGYEDLSKRAILYCKGLPMALKVLGSNLRKKSKVVWECELRKLQKIPNVQIHNVLKLSYECLDRSQKDIFLDIVCFFNGWERDRVTYILEACDFFAASGIETLLDKTLVTISNYSHIKVNDLIQKMGWEIVHQESIKDLGRRSRLWKQEEVYDVLKYNKGTDFVEGMVLDLEQLAGDLYLSCDSLAKMTNMRILRIHRRKWGCRFSVHLPDGIELPYKLRYLEWEGFCLRSLPSNFCAEQLVELHMWNSKLKMLWDGVQNLVNLKTIDLDDSRDLIEIPDLSMAEKLERVSLYDCESLCKLHPSISSLPKLKYLILSGCKVIQSVNVHSKSLNVLRLRGCSSLSEFSVTSEEMTHLDLSQTAIRELLSPMISLPKLTYLYLSGCRHIENVNLHLRSLRVLTLVGCSCLKEFSVASDKLTLLELPDTAIGVLPSSIGHLLSLEELDLRGTNIECLPASIKSLSMLRVLWLNDCKKLVSVQELPPSLRELHINDCWKLVSLPELPPSVKEVSAFNCRSLEENITQELVLRHMLQSCIPDKHQQYPYNPVYFDGGYFIFPGDHITDNCAFHATESSITIPSLPRSHLWGYIFCIIIAKGPMSDHQFSCSIYQEDILVGCGHRRFIGCENLISDHVLFFYHDVINFGGTDEVYGPFNSFTFMFEFNGDKHTIKGCGVFPVYLTSSGFKFCNVDSQPRANGPKIGGCDKENLEQLFAAKRRKTA 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01075 1067 ProSiteProfiles TIR domain profile. 9 169 IPR000157 GO:0007165
Viun1g01075 1067 PRINTS Disease resistance protein signature 271 285 - -
Viun1g01075 1067 PRINTS Disease resistance protein signature 362 376 - -
Viun1g01075 1067 PRINTS Disease resistance protein signature 203 218 - -
Viun1g01075 1067 PRINTS Disease resistance protein signature 607 623 - -
Viun1g01075 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 421 IPR027417 -
Viun1g01075 1067 Pfam Leucine Rich Repeat 588 607 IPR011713 -
Viun1g01075 1067 Coils Coil 235 255 - -
Viun1g01075 1067 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 147 IPR035897 -
Viun1g01075 1067 Gene3D Ribonuclease Inhibitor 700 883 IPR032675 -
Viun1g01075 1067 Gene3D Ribonuclease Inhibitor 514 699 IPR032675 -
Viun1g01075 1067 Gene3D - 170 326 IPR027417 -
Viun1g01075 1067 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 694 IPR044974 GO:0006952
Viun1g01075 1067 SUPERFAMILY L domain-like 526 866 - -
Viun1g01075 1067 Gene3D - 327 411 IPR042197 -
Viun1g01075 1067 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 171 - -
Viun1g01075 1067 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Viun1g01075 1067 Gene3D - 15 169 IPR035897 -
Viun1g01075 1067 SMART till_3 12 144 IPR000157 GO:0007165
Viun1g01075 1067 Pfam NB-ARC domain 190 397 IPR002182 GO:0043531
Viun1g01075 1067 Pfam TIR domain 16 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01075 Viun-Chr1 18609777 18615777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01075 18 792 WRKY Transcription Factor Family AT4G12020 33.292 1.67e-105 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01075 - - vun:114169696 2130.91