Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01073 ATGGGGGAGCATCAAATGATAAGTGCTGTTGCTTCTTTCTCTAACTCTTCCTCCATGGTGTCTTCTAAAAACTATGATGTTTTTCTAAGCTTTCGGGGTGAGGACACTCGCATGAACTTCACAAGCCATCTTCATGAGGCTTTGAAGGAAAAAAAAGTTGAAACCTATATTGACTACCAGCTTGAGAAGGGAGATGAAATTTCACCAGCAGTCTTCAAAGCAATCGAAGATTCTCGTGTGTCTATTGTGATACTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTAGAAGAACTCAGCAAGATTCTAGAATGCCACAGAAACCAAGAACAAATTGTGATTCCAGTGTTTTACAACGTAGACCCATCCCATGTTAGGAAGCAAACAGGGTGCTATGAGCAAAGCTTTGCAACACACGAGGAAGAACTCAGGTGCAACAAATGGAGATCTGCTCTCACTGCAGTAGCCAATTTAGCTGGGTGGGATTCTCGAAACAGGATTGAATCTCAATTCATTAAGGACGTTGTTAAAGATGTTATAGGAAAACTGACTCCTAGATACCCAAACGAACTTAAAGGACTAGTTGGAATTGAGAAAAGTTTTAAACAGATTGAATCATTATTAAAAATTGGTTCAAGTGAAGTTAGAACCGTTGGAATATGGGGCATGGGCGGCATAGGAAAGACCACTCTGGCTATTGCTTTATATGACAAATTGTCTCACGAGTTTGAAGGTCGTTGTGTCCTCACTAATATAAGGGAAAAATCAGACAAGCTCGAAGGTTTACGTGATGAACTTTTGTCGAAGTTGTTAGGGAATAAAATTCATGGGATTGATTATTTTGACATGAGGAGGCTTCAACGTAAAAAGGTTTTCATTGTTCTTGATGATGTGGATACCTCAGAGCAGATAGAAAAGCTAATTCTAGAATACGAGTTTCTCGGACCAGGAAGTAAAGTCATTGTTACAACTAGAAATAAGCAAATACTTAGTCTAGTTGATGAAATATATCAGGTTGAAGAATTAAGCTCATATCACTCTCTTCAACTTTTCTGTTTGACTATATCTGGAGAAAAGCAACCTAAAGATGGATATGAAGATTTATCAAAAAGGGCAATTTTGTACTGCAAAGGTCTTCCTATGGCTTTAAAAGTTTTGGGTTCAAATCTACGCAAAAAAAGTAAAGTGGTATGGGAATGTGAATTGAGAAAACTCCAAAAGATTCCAAATGTTCAAATTCATAATGTGCTAAAATTAAGTTATGAGTGCTTAGATCGATCTCAAAAGGACATCTTTTTAGACATTGTGTGCTTCTTCAATGGATGGGAAAGAGATAGGGTAACATATATTCTGGAGGCTTGCGATTTCTTTGCAGCATCTGGGATAGAAACCCTTTTAGATAAAACTCTCGTAACAATTTCAAATTATAGTCACATAAAAGTGAATGACTTGATACAAAAAATGGGCTGGGAAATTGTTCATCAAGAGTCTATCAAAGATCTTGGAAGGCGAAGTCGATTATGGAAACAGGAGGAAGTGTATGATGTTTTGAAATATAACAAGGGGACTGATTTTGTTGAAGGCATGGTTTTAGATTTGGAGCAATTAGCTGGAGATTTATATTTGAGTTGTGATTCCCTTGCAAAGATGACTAACATGAGAATTCTTAGAATCCACAGACGAAAATGGGGTTGCAGATTTAGTGTGCACCTTCCTGATGGTATTGAGTTGCCTTACAAATTGAGGTACCTTGAGTGGGAAGGATTCTGTCTCAGGTCTTTGCCATCAAACTTTTGTGCTGAACAACTTGTAGAGCTTCACATGTGGAATAGCAAGCTTAAAATGCTTTGGGATGGGGTTCAGAACCTTGTGAATTTAAAGACAATTGACCTTGATGACTCTCGAGACTTGATTGAGATCCCAGACTTGTCTATGGCGGAAAAACTTGAAAGAGTGTCCCTTTATGATTGTGAAAGCTTATGTAAGCTTCATCCATCCATCTCATCTCTTCCCAAACTCAAATATTTGATTTTAAGTGGTTGCAAAGTCATTCAAAGCGTAAATGTTCACTCAAAATCTCTAAATGTACTAAGACTCAGAGGCTGTTCATCTCTCAGTGAATTCTCTGTGACATCAGAGGAGATGACACATTTGGACTTGTCTCAAACCGCTATACGTGAATTGTTGTCACCAATGATATCTCTCCCCAAGCTTACATATTTGTACTTAAGTGGCTGTAGACATATTGAAAACGTTAATCTTCATTTAAGATCTCTCCGTGTGCTAACACTCGTTGGTTGTTCATGTCTCAAAGAATTCTCAGTGGCATCAGATAAATTGACACTATTGGAGTTACCTGACACTGCTATAGGTGTATTGCCATCATCAATTGGTCACTTGTTATCTTTAGAAGAGTTAGACCTACGTGGAACTAATATTGAGTGCTTGCCTGCAAGTATCAAAAGCCTTTCAATGTTAAGAGTGCTTTGGTTAAATGATTGCAAGAAACTGGTATCTGTACAAGAGCTTCCACCATCCTTAAGAGAACTTCATATAAATGATTGTTGGAAACTTGTGTCTCTGCCAGAGCTTCCACCATCAGTGAAAGAGGTGAGTGCCTTTAATTGCCGTTCTCTAGAGGAAAACATCACACAAGAGCTAGTGTTACGACACATGTTACAAAGTTGCATACCCGACAAACATCAACAATATCCTTACAATCCTGTGTATTTTGATGGTGGTTATTTCATCTTTCCGGGAGACCACATCACCGACAATTGTGCGTTTCATGCAACAGAGAGTTCAATAACTATTCCTTCCCTTCCCAGATCTCACTTGTGGGGTTACATTTTTTGCATCATTATTGCCAAGGGACCGATGTCAGATCATCAGTTTTCATGTTCTATCTATCAAGAAGATATATTGGTAGGTTGTGGTCATCGTAGGTTTATAGGCTGCGAAAATTTAATTTCAGATCATGTGTTATTTTTTTATCATGATGTGATCAATTTCGGTGGAACAGATGAAGTGTACGGTCCTTTTAATAGCTTTACATTCATGTTTGAATTTAATGGTGATAAACACACCATAAAAGGGTGTGGGGTCTTTCCCGTATATTTGACATCATCTGGGTTTAAGTTTTGTAATGTTGACTCACAACCAAGAGCAAATGGACCCAAAATTGGAGGCTGTGATAAAGAAAATTTGGAACAACTTTTTGCAGCCAAGAGAAGAAAGACTGCGTGA 3246 0.3817 MGEHQMISAVASFSNSSSMVSSKNYDVFLSFRGEDTRMNFTSHLHEALKEKKVETYIDYQLEKGDEISPAVFKAIEDSRVSIVILSENYASSKWCLEELSKILECHRNQEQIVIPVFYNVDPSHVRKQTGCYEQSFATHEEELRCNKWRSALTAVANLAGWDSRNRIESQFIKDVVKDVIGKLTPRYPNELKGLVGIEKSFKQIESLLKIGSSEVRTVGIWGMGGIGKTTLAIALYDKLSHEFEGRCVLTNIREKSDKLEGLRDELLSKLLGNKIHGIDYFDMRRLQRKKVFIVLDDVDTSEQIEKLILEYEFLGPGSKVIVTTRNKQILSLVDEIYQVEELSSYHSLQLFCLTISGEKQPKDGYEDLSKRAILYCKGLPMALKVLGSNLRKKSKVVWECELRKLQKIPNVQIHNVLKLSYECLDRSQKDIFLDIVCFFNGWERDRVTYILEACDFFAASGIETLLDKTLVTISNYSHIKVNDLIQKMGWEIVHQESIKDLGRRSRLWKQEEVYDVLKYNKGTDFVEGMVLDLEQLAGDLYLSCDSLAKMTNMRILRIHRRKWGCRFSVHLPDGIELPYKLRYLEWEGFCLRSLPSNFCAEQLVELHMWNSKLKMLWDGVQNLVNLKTIDLDDSRDLIEIPDLSMAEKLERVSLYDCESLCKLHPSISSLPKLKYLILSGCKVIQSVNVHSKSLNVLRLRGCSSLSEFSVTSEEMTHLDLSQTAIRELLSPMISLPKLTYLYLSGCRHIENVNLHLRSLRVLTLVGCSCLKEFSVASDKLTLLELPDTAIGVLPSSIGHLLSLEELDLRGTNIECLPASIKSLSMLRVLWLNDCKKLVSVQELPPSLRELHINDCWKLVSLPELPPSVKEVSAFNCRSLEENITQELVLRHMLQSCIPDKHQQYPYNPVYFDGGYFIFPGDHITDNCAFHATESSITIPSLPRSHLWGYIFCIIIAKGPMSDHQFSCSIYQEDILVGCGHRRFIGCENLISDHVLFFYHDVINFGGTDEVYGPFNSFTFMFEFNGDKHTIKGCGVFPVYLTSSGFKFCNVDSQPRANGPKIGGCDKENLEQLFAAKRRKTA 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01073 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 435 IPR027417 -
Viun1g01073 1081 Gene3D - 341 425 IPR042197 -
Viun1g01073 1081 Pfam NB-ARC domain 204 411 IPR002182 GO:0043531
Viun1g01073 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 708 IPR044974 GO:0006952
Viun1g01073 1081 Gene3D - 21 183 IPR035897 -
Viun1g01073 1081 Gene3D Ribonuclease Inhibitor 528 713 IPR032675 -
Viun1g01073 1081 Gene3D Ribonuclease Inhibitor 714 897 IPR032675 -
Viun1g01073 1081 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 161 IPR035897 -
Viun1g01073 1081 SUPERFAMILY "Winged helix" DNA-binding domain 412 518 IPR036390 -
Viun1g01073 1081 Gene3D - 184 340 IPR027417 -
Viun1g01073 1081 Pfam Leucine Rich Repeat 602 621 IPR011713 -
Viun1g01073 1081 ProSiteProfiles TIR domain profile. 23 183 IPR000157 GO:0007165
Viun1g01073 1081 PRINTS Disease resistance protein signature 376 390 - -
Viun1g01073 1081 PRINTS Disease resistance protein signature 217 232 - -
Viun1g01073 1081 PRINTS Disease resistance protein signature 285 299 - -
Viun1g01073 1081 PRINTS Disease resistance protein signature 621 637 - -
Viun1g01073 1081 Coils Coil 249 269 - -
Viun1g01073 1081 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 185 - -
Viun1g01073 1081 SMART till_3 24 158 IPR000157 GO:0007165
Viun1g01073 1081 SUPERFAMILY L domain-like 540 880 - -
Viun1g01073 1081 Pfam TIR domain 24 193 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01073 Viun-Chr1 18609777 18615777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01073 21 806 WRKY Transcription Factor Family AT4G12020 33.538 1.68e-108 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01073 - - vun:114169696 2169.04