Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01054 ATGGGGGAGGATTGTAGGGAGTTTGGAGAAAGCACCAAAATGAAGGAGAAGATGGAAGAAGTTGAGAGAGAGGAAGAAATAGACCCAGAAAGCAATCCAGTGAATGAGCCACTTTTGAAGAGGAACCGAACACTGTCTTCCAACCCTCTTGCTCTGGTTGGAGAAAAAGTTTCGTACATAGAAAGCTTGGATTATGAAATAAATGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTGCAGTACATATTCTTGAAATGGTTATTAGCATTCCTTGTTGGACTTCTGACTGGTATCATAGCCACTCTCATCAATCTTGCTATTGAGAACATTGCTGGGTATAAGCTTCTGGCTGTTCTTAAATACATCCACAGAGAAAGGTACTTGACAGGTTTCCTATATTTCACGGGCATTAATTTCATTTTGACATTTGTTGCTGCAATTCTCTGCGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAAATCAAAGCTTATCTTAATGGTGTAGATACTCCTAACATGTTTGGTGCTACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCAGTGTCCGCAGGACTAGATTTGGGAAAAGAAGGACCGTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGTCCCGACAATTACAGGATCAAATGGCGTTGGCTTCGATATTTTAACAATGATCGTGACCGTCGTGATCTTATCACCTGTGGTTCATCTTCGGGAGTTTGTGCAGCTTTCCGGGCTCCGGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTACTATGGAGAACTTTTTTTAGCACAGCTGTGGTGGTGGTGATTCTCAGGGCCTTCATTGAAATCTGCAATTCTGGAAAATGTGGTCTTTTTGGTGAAGGAGGTTTGATTATGTTTGATGTAAGCAATGTGACAGTGAGGTACCATGTTATGGATATTGTCATCGTTGTAGTCATCGGTATCATAGGCGGGGTATTGGGAAGCCTTTACAATCATGTTCTACACAAGATCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAGATACATAAACTCCTCCTCAGTCTTGCAGTTGCACTCTTCACGTCCATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGTACCCCATGTGATTCATCGATTCCAGAGTCGGCATGCCCCACCAATGGACGATCCGGAAATTTCAAACAATTCAACTGTCCACCTGGCTACTATAACGATCTGGCCACTCTGCTGCTTACCACTAATGATGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATATCAACCCATGTCCCTCCTAATTTTCTTTGTACTATATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTTTTCCTCCCAATTATTCTAATGGGCTCAGGTTATGGACGCCTTCTTGGCTTATATATGGGGCCTCATACAAACATTGACCAAGGGCTGTTTGCCGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACGGTATCCCTTTGTGTGATCTTTCTTGAACTCACCAATAATCTTCTCCTACTACCAATAACGATGATTGTTCTCCTAATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGTATCTACGAGATTATACTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAATCCCGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAACCATCTGTGGTTACCCTCCAAGGAATAGAAAAGGTATCTAAAATAGTAGATGTCTTGAAAAACAATGCGCATAATGGCTTCCCTGTTTTGGGTGATGGAGGAGTAGCAGTACCACCAGTAGTAGGACAAGCCAATGGAGCAACAGAGTTGCATGGACTAGTTTTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCTTTAAAGAAAGAAGGAGAACAATGGACTGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTAGATCTACATCCTCTAACCAATACAACTCCCTTTACCGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATTCTCTTCAGACAAGTTGGAATTCGTCATCTGCTTGTAGTACCCAAGTATCAAGCATCCGGGGTATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTGCTGGCACACAACATTTTGACAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGAGGAAAAAGAAATTGA 2379 0.4346 MGEDCREFGESTKMKEKMEEVEREEEIDPESNPVNEPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAIENIAGYKLLAVLKYIHRERYLTGFLYFTGINFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVILRAFIEICNSGKCGLFGEGGLIMFDVSNVTVRYHVMDIVIVVVIGIIGGVLGSLYNHVLHKILRLYNLINQKGKIHKLLLSLAVALFTSMCQYGLPFLAKCTPCDSSIPESACPTNGRSGNFKQFNCPPGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPMSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGLYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLQGIEKVSKIVDVLKNNAHNGFPVLGDGGVAVPPVVGQANGATELHGLVLRAHLIQALKKKWFFKERRRTMDWEVREKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGIRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKSRGKRN 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01054 792 ProSiteProfiles CBS domain profile. 719 785 IPR000644 -
Viun1g01054 792 FunFam Chloride channel ClC3 84 405 - -
Viun1g01054 792 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 15 777 - -
Viun1g01054 792 MobiDBLite consensus disorder prediction 1 22 - -
Viun1g01054 792 SMART cbs_1 722 775 IPR000644 -
Viun1g01054 792 SMART cbs_1 605 667 IPR000644 -
Viun1g01054 792 CDD ClC_6_like 61 583 - -
Viun1g01054 792 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun1g01054 792 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun1g01054 792 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun1g01054 792 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun1g01054 792 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun1g01054 792 MobiDBLite consensus disorder prediction 1 34 - -
Viun1g01054 792 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 773 - -
Viun1g01054 792 Gene3D - 586 781 IPR046342 -
Viun1g01054 792 Gene3D Clc chloride channel 83 585 - -
Viun1g01054 792 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 Pfam CBS domain 721 771 IPR000644 -
Viun1g01054 792 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
Viun1g01054 792 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun1g01054 792 SUPERFAMILY CBS-domain pair 587 772 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01054 Viun-Chr1 18256509 18260579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01054 28 786 Ion Channels AT3G27170 80.369 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01054 K05016 - gmx:100788620 1452.57