Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01041 ATGGGCACAGTAGAAATGATGATTGCAATCCACATGAAGGCTTTGGTCTTTTTCCTTTGCCTCTTTCTCCCCTCATTGCCCAAACACTTGCTAAGCTGTGAGACACCTTCACCTCATGTCTCTTCCTACCATTGCATTGAAAATCTCTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACAAACTCCTATTACTCCTCTCTCTCCAACCTCACCACTTACTTGGGACTCAATAAGTTTCTGCTAGCACAAGCAAATGGCTTCTCTGCAGACACTGACTTCCTCTCCCACCACCAACCCCTTCTCATTCCAATCCATTGCAAATGCAAAGCTGGCTTCTCTCATGCTCACCTAACCAAAACTGCTATCAAAGGTGAGAGCTTCTATGACATTGCTCAATCACTTGAGGGCTTGACAACCTGCAAGGCTATTAGGGACAACAACCCTGGTGTCTCACCTTGGAATCTTGATGACAGAGTCAGATTGATTATCCCATTGAGATGTTCTTGCCCCTTTTCATCACAACTTACACCTCAACCAAAGTTTCTCCTTTCTTATCCTGTTACTCAAGGTGATACAATTTCTAGTTTGGCCTCCAAGTTTAATATCACTCAACAAGCTATTGTCTCTGCTAATCACATATCATCATCACAAGGTTTCACCCCTGGAACTTCTCTTCCACCCTTTACCTCTATTCTCATTCCTCTCAATGCTAAGCCTGTCATTGGTCCTTTGCTTAAACCCAAGGAACCCAATTCTGGCTTTCAACCAACCAGCATCCCTGTAAAAAGTCCACACAACAAGTCACCAATGTGGAAGACTGAATTGTTCATTGGCCTTGCTGGGGTTGCACTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGGGGATGGGAGTTCATGCAAAGAAGGAGATATGGAGCTGCAACATCTGAATCAGAGTGTGAGAACCACCTCCACCAGTGACAAGAAAGTTTCGTTTGAAGGGTCTCAGGATACCCTTGATGTGAAAATCGTTGATGCCACATCGCGCAAGATGTTGCTGGAGACATACACTATTGAGAACATCAGAAAAGCAACTGAAGATTTCAGCTCAAGCAACCACATTGAGGGATCTGTATATCACGGTCGTCTGAATGGGAAGAACATGGCTGTCAAGAGAACAAAGGCAGAAACAGTGTTAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCACCACCCCAACATACTTAGGCTTCTTGGAACAAGCGTGGCAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTTCTCACATGGAGCCAAAGGCTGAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTAATGAATCCCTGCTATGTGCATAGAAATGTTAAGAGCAGGAACATCTTTCTGGATGAAGAATTTGGTGCCAAGTTAGGGAATTTTGGTACGGCAGATTGTGTTGAGCATGACACTGAGGATCCACATTTCTATTCCACCAACCCTGCCTCATGGAGCCTTGGTTATTTGGCACCTGAATACGTGCACCAAGGCATAATTGCCCCAAGCATCGATATCTTTGCCTATGGGGTGGTTTTGTTAGAGGTTTTATCTGGTCAAACTCCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATCTGGCTCACAGATAAAATAAAGTCCATTTTGGTGTCTGAAAATGTGAATGAACTAAGGGGGTGGATAGACAGTGCATTAGGGGAGAACTATTCATTTGATGCAGCTGTGAGCATTGTCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCTTGTTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCGAGATTGGTGGAGGAATTACCAGAAGGAGAACAACACATGTTAATGAGTGAAAGCTCAAGCAAACCTCTGGTGAAGGCAGTGGAAAACAGTCTTGAGTAA 2073 0.4419 MGTVEMMIAIHMKALVFFLCLFLPSLPKHLLSCETPSPHVSSYHCIENLSHNQCATFALFLTNSYYSSLSNLTTYLGLNKFLLAQANGFSADTDFLSHHQPLLIPIHCKCKAGFSHAHLTKTAIKGESFYDIAQSLEGLTTCKAIRDNNPGVSPWNLDDRVRLIIPLRCSCPFSSQLTPQPKFLLSYPVTQGDTISSLASKFNITQQAIVSANHISSSQGFTPGTSLPPFTSILIPLNAKPVIGPLLKPKEPNSGFQPTSIPVKSPHNKSPMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGDGSSCKEGDMELQHLNQSVRTTSTSDKKVSFEGSQDTLDVKIVDATSRKMLLETYTIENIRKATEDFSSSNHIEGSVYHGRLNGKNMAVKRTKAETVLKIDLGLFHDALHHHPNILRLLGTSVAEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFGAKLGNFGTADCVEHDTEDPHFYSTNPASWSLGYLAPEYVHQGIIAPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILVSENVNELRGWIDSALGENYSFDAAVSIVNIARACVEEDSCLRPSAREIVEKLSRLVEELPEGEQHMLMSESSSKPLVKAVENSLE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01041 690 FunFam PTI1-like tyrosine-protein kinase 3 445 671 - -
Viun1g01041 690 ProSiteProfiles Protein kinase domain profile. 332 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01041 690 Pfam Protein kinase domain 381 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01041 690 ProSiteProfiles LysM domain profile. 185 229 IPR018392 -
Viun1g01041 690 SUPERFAMILY LysM domain 186 227 IPR036779 -
Viun1g01041 690 MobiDBLite consensus disorder prediction 668 690 - -
Viun1g01041 690 Pfam LysM domain 187 219 IPR018392 -
Viun1g01041 690 Gene3D LysM domain 185 228 IPR036779 -
Viun1g01041 690 SUPERFAMILY Protein kinase-like (PK-like) 355 657 IPR011009 -
Viun1g01041 690 Gene3D Phosphorylase Kinase; domain 1 346 444 - -
Viun1g01041 690 Gene3D Transferase(Phosphotransferase) domain 1 445 679 - -
Viun1g01041 690 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 28 664 - -
Viun1g01041 690 SMART LysM_2 186 236 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01041 Viun-Chr1 17994842 17997544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01041 43 683 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 39.910 1.76e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun1g01041 Pkinase 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01041 - - gmx:100816082 1177.54