Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01021 ATGGTTATTGTAACTGAACTTCTGTTAGGGGGAACATTGCGCAAATACCTTTGGGGTATCCGGCCAAACTGCTTGGATATGCGTGTGGCAGTTGCATTTGCTCTGGATATTGCGCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCATCGTGACCTTAAACCTGATAACTTGATCTTGACAGAAGATCATAAAACCGTTAAACTTGCCGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGGACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAGCATTACAACCATAAGGTGGATGCCTACAGTTTTGCTATAGTTCTGTGGGAGCTCATCCATAATAGGTTGCCTTTTGAAGGCATGTCAAATCTACAGGCTGCATATGCAGCTGCATTTAAGAATACAAGGCCGAGTGCTGAAGACCTCCCTGATGAATTGGCTCTGATTGTGACCTCTTGTTGGAGAGAGGATCCAAATGATCGACCCAATTTCTGTCAAATAATACAGATGTTGCTTCGATATCTAATTACCATTTCCCCGGCCGATCCAGTTGTTCCGATGCGTATTGCATCATCCAAAAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTCGAAGAGATGATTCTAGCGAAACCCCAAAAGTTGATATTGAAGGCAGGTCTAAAGGGTGTTTCTTCTGCTTTAATCAGTGTTACTGA 768 0.4375 MVIVTELLLGGTLRKYLWGIRPNCLDMRVAVAFALDIARAMECLHSHGIIHRDLKPDNLILTEDHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNRLPFEGMSNLQAAYAAAFKNTRPSAEDLPDELALIVTSCWREDPNDRPNFCQIIQMLLRYLITISPADPVVPMRIASSKNAVLPPESPGTSALMARRDDSSETPKVDIEGRSKGCFFCFNQCY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01021 255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Viun1g01021 255 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 189 - -
Viun1g01021 255 SUPERFAMILY Protein kinase-like (PK-like) 2 212 IPR011009 -
Viun1g01021 255 MobiDBLite consensus disorder prediction 214 237 - -
Viun1g01021 255 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01021 255 FunFam serine/threonine-protein kinase HT1 10 210 - -
Viun1g01021 255 Gene3D Transferase(Phosphotransferase) domain 1 1 201 - -
Viun1g01021 255 Pfam Protein tyrosine and serine/threonine kinase 2 189 IPR001245 GO:0004672|GO:0006468
Viun1g01021 255 PRINTS Tyrosine kinase catalytic domain signature 5 18 IPR001245 GO:0004672|GO:0006468
Viun1g01021 255 PRINTS Tyrosine kinase catalytic domain signature 160 182 IPR001245 GO:0004672|GO:0006468
Viun1g01021 255 PRINTS Tyrosine kinase catalytic domain signature 117 139 IPR001245 GO:0004672|GO:0006468
Viun1g01021 255 PRINTS Tyrosine kinase catalytic domain signature 43 61 IPR001245 GO:0004672|GO:0006468
Viun1g01021 255 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01021 Viun-Chr1 17423148 17446470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01021 1 255 MAP Kinase Kinase Kinase AT5G50180 77.647 7.20e-151 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun1g01021 PK_Tyr_Ser-Thr 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01021 - - pvu:PHAVU_001G096600g 495.738