Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00994 ATGTGTTTTTTGTTCTTCTTCGATACAATGGCTAGGAGCTGGCTTATTGACGTTGGAGGATTTGCAAAGAAAGTGAAGAACACTACTCTATCTTCAGCCGATCAAATCAAGGATTGTGGGGCATATCGAGAATGTCCTAACTGTCATTATCGTATTGATAACAGTGATGTTTCTAGTGAGTGGCCAGGCTTTCCTCTTGGTGTTAAGTTTGATCCTTCTGATGTAGAACTCTTGGAACATTTAGCAGGAAAATGTGGTGTTGGAAACACACAGCCAGATATGTTTATCAACGAGTTCATCTCAACTCTTGAAGGAGACCAAGGTATTTGCTGCACTCATCCAGAAAATCTTCAAGGTGCTAAAAAAGATGGGAGTTATTTCCATTTCTTTCACAAGACAATAAATGCTTATGCAACTGGTCAAAGAAAGCGTAGAAAGATTCATCATCAACAGGGTTTGACTGAAGAACATTGGCATTGGCACAAGACAGGTAGGACGAAAGCTATAATACAAAATGGAATGTGCAAAGGCTTTAAGAAAATCATGGTTCTTCATGTAAGATCTAAGAGTGGGTCCAAACCCTTCAAATCCAACTGGGTAATGCATCAGTATCATCTAGGGACGGAAGAAGAAGAAAAGGAAGGTGAGTATGTGGTTTCTAAAATTTTTTATCAACAGCAAAAGCAAACTGAGAACAATGAGGACAATCCAATGGTTGAAGTTCCTGACAATATAGTGTCAAGAACCAGTCCAAGGACTCCAAAACCAAATCCTCCCCATCCACCACCTCGTGTAGGAAACTCTGTTGATTGTGATGATTGTATCTATGAAACTATACGTCTGCCTTCTGGCCAGACAATTCTTGGAGAATCACATGCCCCTATATCTGATGTTCAGGACCTAGACAATTCTGCATGTTTACCTGGCGAATCACAAGCTGAGGAACACACTGAATATGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGACTCTTCTGCTCTGTTAAATGATTCTGGATTGGACTCCAGCAATCTCTATGACTTAGCATTCTATGATAACCAAATAGCTAGAAATGATAACGAATCTTGTGGAATATCTGTCCTGGATACGCTGGAATTAGACACTCCGGACTTTGATCATTCTAATTTGAATTTTTATTCTCAATACAGATTATGA 1185 0.3941 MCFLFFFDTMARSWLIDVGGFAKKVKNTTLSSADQIKDCGAYRECPNCHYRIDNSDVSSEWPGFPLGVKFDPSDVELLEHLAGKCGVGNTQPDMFINEFISTLEGDQGICCTHPENLQGAKKDGSYFHFFHKTINAYATGQRKRRKIHHQQGLTEEHWHWHKTGRTKAIIQNGMCKGFKKIMVLHVRSKSGSKPFKSNWVMHQYHLGTEEEEKEGEYVVSKIFYQQQKQTENNEDNPMVEVPDNIVSRTSPRTPKPNPPHPPPRVGNSVDCDDCIYETIRLPSGQTILGESHAPISDVQDLDNSACLPGESQAEEHTEYDGLDDILLCKEILDSSALLNDSGLDSSNLYDLAFYDNQIARNDNESCGISVLDTLELDTPDFDHSNLNFYSQYRL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00994 394 Pfam No apical meristem (NAM) protein 65 206 IPR003441 GO:0003677|GO:0006355
Viun1g00994 394 FunFam NAC domain-containing protein 8 73 229 - -
Viun1g00994 394 SUPERFAMILY NAC domain 49 225 IPR036093 GO:0003677|GO:0006355
Viun1g00994 394 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 311 IPR044799 GO:0003700
Viun1g00994 394 Gene3D NAC domain 73 230 IPR036093 GO:0003677|GO:0006355
Viun1g00994 394 ProSiteProfiles NAC domain profile. 64 225 IPR003441 GO:0003677|GO:0006355
Viun1g00994 394 MobiDBLite consensus disorder prediction 228 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00994 Viun-Chr1 16807487 16811686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00994 42 227 NAC Transcription Factor Family AT4G28500 50.532 3.33e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g00994 NAM 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00994 - - gmx:100780442 577.785