Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00993 ATGAGCTGGCTTATTGACGTTGGAGGATTTGCAAAGAAAGTGAAGAACACTACTCTATCTTCAGCCGATCAAATCAAGGATTGTGGGGCATATCGAGAATGTCCTAACTGTCATTATCGTATTGATAACAGTGATGTTTCTAGTGAGTGGCCAGGCTTTCCTCTTGGTGTTAAGTTTGATCCTTCTGATGTAGAACTCTTGGAACATTTAGCAGGAAAATGTGGTGTTGGAAACACACAGCCAGATATGTTTATCAACGAGTTCATCTCAACTCTTGAAGGAGACCAAGGTATTTGCTGCACTCATCCAGAAAATCTTCAAGGTGCTAAAAAAGATGGGAGTTATTTCCATTTCTTTCACAAGACAATAAATGCTTATGCAACTGGTCAAAGAAAGCGTAGAAAGATTCATCATCAACAGGGTTTGACTGAAGAACATTGGCATTGGCACAAGACAGGTAGGACGAAAGCTATAATACAAAATGGAATGTGCAAAGGCTTTAAGAAAATCATGGTTCTTCATGTAAGATCTAAGAGTGGGTCCAAACCCTTCAAATCCAACTGGGTAATGCATCAGTATCATCTAGGGACGGAAGAAGAAGAAAAGGAAGGTGAGTATGTGGTTTCTAAAATTTTTTATCAACAGCAAAAGCAAACTGAGAACAATGAGGACAATCCAATGGTTGAAGTTCCTGACAATATAGTGTCAAGAACCAGTCCAAGGACTCCAAAACCAAATCCTCCCCATCCACCACCTCGTGTAGGAAACTCTGTTGATTGTGATGATTGTATCTATGAAACTATACGTCTGCCTTCTGGCCAGACAATTCTTGGAGAATCACATGCCCCTATATCTGATGTTCAGGACCTAGACAATTCTGCATGTTTACCTGGCGAATCACAAGCTGAGGAACACACTGAATATGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGACTCTTCTGCTCTGTTAAATGATTCTGGATTGGACTCCAGCAATCTCTATGACTTAGCATTCTATGATAACCAAATAGCTAGAAATGATAACGAATCTTGTGGAATATCTGTCCTGGATACGCTGGAATTAGACACTCCGGACTTTGATCATTCTATTATGAAGTTGATGGGCATTCTTCAATTGAGTGGATGGGCAGATTATGAAGTCTTTTTGGTACTAAATCGAGAAGTTGTTTCACTCAATTGCACCCTTTGTTTCTTTCATCTTCAATTGCAGTGGTTTTTCCTCTTTCGGATGCCGCAAATATAG 1275 0.3984 MSWLIDVGGFAKKVKNTTLSSADQIKDCGAYRECPNCHYRIDNSDVSSEWPGFPLGVKFDPSDVELLEHLAGKCGVGNTQPDMFINEFISTLEGDQGICCTHPENLQGAKKDGSYFHFFHKTINAYATGQRKRRKIHHQQGLTEEHWHWHKTGRTKAIIQNGMCKGFKKIMVLHVRSKSGSKPFKSNWVMHQYHLGTEEEEKEGEYVVSKIFYQQQKQTENNEDNPMVEVPDNIVSRTSPRTPKPNPPHPPPRVGNSVDCDDCIYETIRLPSGQTILGESHAPISDVQDLDNSACLPGESQAEEHTEYDGLDDILLCKEILDSSALLNDSGLDSSNLYDLAFYDNQIARNDNESCGISVLDTLELDTPDFDHSIMKLMGILQLSGWADYEVFLVLNREVVSLNCTLCFFHLQLQWFFLFRMPQI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00993 424 Coils Coil 424 424 - -
Viun1g00993 424 MobiDBLite consensus disorder prediction 217 257 - -
Viun1g00993 424 Gene3D NAC domain 62 219 IPR036093 GO:0003677|GO:0006355
Viun1g00993 424 ProSiteProfiles NAC domain profile. 53 214 IPR003441 GO:0003677|GO:0006355
Viun1g00993 424 Pfam No apical meristem (NAM) protein 54 195 IPR003441 GO:0003677|GO:0006355
Viun1g00993 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 300 IPR044799 GO:0003700
Viun1g00993 424 FunFam NAC domain-containing protein 8 62 218 - -
Viun1g00993 424 SUPERFAMILY NAC domain 38 214 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00993 Viun-Chr1 16807429 16810492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00993 31 216 NAC Transcription Factor Family AT4G28500 50.532 5.24e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g00993 NAM 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00993 - - gmx:100780442 568.155