Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00992 ATGTTTATCAACGAGTTCATCTCAACTCTTGAAGGAGACCAAGGTATTTGCTGCACTCATCCAGAAAATCTTCAAGGTGCTAAAAAAGATGGGAGTTATTTCCATTTCTTTCACAAGACAATAAATGCTTATGCAACTGGTCAAAGAAAGCGTAGAAAGATTCATCATCAACAGGGTTTGACTGAAGAACATTGGCATTGGCACAAGACAGGTAGGACGAAAGCTATAATACAAAATGGAATGTGCAAAGGCTTTAAGAAAATCATGGTTCTTCATGTAAGATCTAAGAGTGGGTCCAAACCCTTCAAATCCAACTGGGTAATGCATCAGTATCATCTAGGGACGGAAGAAGAAGAAAAGGAAGGTGAGTATGTGGTTTCTAAAATTTTTTATCAACAGCAAAAGCAAACTGAGAACAATGAGGACAATCCAATGGTTGAAGTTCCTGACAATATAGTGTCAAGAACCAGTCCAAGGACTCCAAAACCAAATCCTCCCCATCCACCACCTCGTGTAGGAAACTCTGTTGATTGTGATGATTGTATCTATGAAACTATACGTCTGCCTTCTGGCCAGACAATTCTTGGAGAATCACATGCCCCTATATCTGATGTTCAGGACCTAGACAATTCTGCATGTTTACCTGGCGAATCACAAGCTGAGGAACACACTGAATATGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGACTCTTCTGCTCTGTTAAATGATTCTGGATTGGACTCCAGCAATCTCTATGACTTAGCATTCTATGATAACCAAATAGCTAGAAATGATAACGAATCTTGTGGAATATCTGTCCTGGATACGCTGGAATTAGACACTCCGGACTTTGATCATTCTATTATGAAGTTGATGGGCATTCTTCAATTGAGTGGATGGGCAGATTATGAAGTCTTTTTGGTACTAAATCGAGAAGTTGTTTCACTCAATTGCACCCTTTGTTTCTTTCATCTTCAATTGCAGTGGTTTTTCCTCTTTCGGATGCCGCAAATATAG 1029 0.3946 MFINEFISTLEGDQGICCTHPENLQGAKKDGSYFHFFHKTINAYATGQRKRRKIHHQQGLTEEHWHWHKTGRTKAIIQNGMCKGFKKIMVLHVRSKSGSKPFKSNWVMHQYHLGTEEEEKEGEYVVSKIFYQQQKQTENNEDNPMVEVPDNIVSRTSPRTPKPNPPHPPPRVGNSVDCDDCIYETIRLPSGQTILGESHAPISDVQDLDNSACLPGESQAEEHTEYDGLDDILLCKEILDSSALLNDSGLDSSNLYDLAFYDNQIARNDNESCGISVLDTLELDTPDFDHSIMKLMGILQLSGWADYEVFLVLNREVVSLNCTLCFFHLQLQWFFLFRMPQI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00992 342 ProSiteProfiles NAC domain profile. 1 132 IPR003441 GO:0003677|GO:0006355
Viun1g00992 342 Gene3D NAC domain 2 137 IPR036093 GO:0003677|GO:0006355
Viun1g00992 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 218 IPR044799 GO:0003700
Viun1g00992 342 MobiDBLite consensus disorder prediction 135 175 - -
Viun1g00992 342 Pfam No apical meristem (NAM) protein 6 113 IPR003441 GO:0003677|GO:0006355
Viun1g00992 342 SUPERFAMILY NAC domain 13 132 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00992 Viun-Chr1 16807429 16810853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00992 2 134 NAC Transcription Factor Family AT4G28500 56.391 1.36e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g00992 NAM 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00992 - - gmx:100780442 412.149