Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00989 ATGTGTTTTTTGTTCTTCTTCGATACAATGGCTAGGAGCTGGCTTATTGACGTTGGAGGATTTGCAAAGAAAGTGAAGAACACTACTCTATCTTCAGCCGATCAAATCAAGGATTGTGGGGCATATCGAGAATGTCCTAACTGTCATTATCGTATTGATAACAGTGATGTTTCTAGTGAGTGGCCAGGCTTTCCTCTTGGTGTTAAGTTTGATCCTTCTGATGTAGAACTCTTGGAACATTTAGCAGGAAAATGTGGTGTTGGAAACACACAGCCAGATATGTTTATCAACGAGTTCATCTCAACTCTTGAAGGAGACCAAGGTATTTGCTGCACTCATCCAGAAAATCTTCAAGGTGCTAAAAAAGATGGGAGTTATTTCCATTTCTTTCACAAGACAATAAATGCTTATGCAACTGGTCAAAGAAAGCGTAGAAAGATTCATCATCAACAGGGTTTGACTGAAGAACATTGGCATTGGCACAAGACAGGTAGGACGAAAGCTATAATACAAAATGGAATGTGCAAAGGCTTTAAGAAAATCATGGTTCTTCATGTAAGATCTAAGAGTGGGTCCAAACCCTTCAAATCCAACTGGGTAATGCATCAGTATCATCTAGGGACGGAAGAAGAAGAAAAGGAAGGTGAGTATGTGGTTTCTAAAATTTTTTATCAACAGCAAAAGCAAACTGAGAACAATGAGGACAATCCAATGGTTGAAGTTCCTGACAATATAGTGTCAAGAACCAGTCCAAGGACTCCAAAACCAAATCCTCCCCATCCACCACCTCGTGTAGGAAACTCTGTTGATTGTGATGATTGTATCTATGAAACTATACGTCTGCCTTCTGGCCAGGACCTAGACAATTCTGCATGTTTACCTGGCGAATCACAAGCTGAGGAACACACTGAATATGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGACTCTTCTGCTCTGTTAAATGATTCTGGATTGGACTCCAGCAATCTCTATGACTTAGCATTCTATGATAACCAAATAGCTAGAAATGATAACGAATCTTGTGGAATATCTGTCCTGGATACGCTGGAATTAGACACTCCGGACTTTGATCATTCTATTATGAAGTTGATGGGCATTCTTCAATTGAGTGGATGGGCAGATTATGAAGTCTTTTTGGTACTAAATCGAGAAGTTGTTTCACTCAATTGCACCCTTTGTTTCTTTCATCTTCAATTGCAGTGGTTTTTCCTCTTTCGGATGCCGCAAATATAG 1266 0.3973 MCFLFFFDTMARSWLIDVGGFAKKVKNTTLSSADQIKDCGAYRECPNCHYRIDNSDVSSEWPGFPLGVKFDPSDVELLEHLAGKCGVGNTQPDMFINEFISTLEGDQGICCTHPENLQGAKKDGSYFHFFHKTINAYATGQRKRRKIHHQQGLTEEHWHWHKTGRTKAIIQNGMCKGFKKIMVLHVRSKSGSKPFKSNWVMHQYHLGTEEEEKEGEYVVSKIFYQQQKQTENNEDNPMVEVPDNIVSRTSPRTPKPNPPHPPPRVGNSVDCDDCIYETIRLPSGQDLDNSACLPGESQAEEHTEYDGLDDILLCKEILDSSALLNDSGLDSSNLYDLAFYDNQIARNDNESCGISVLDTLELDTPDFDHSIMKLMGILQLSGWADYEVFLVLNREVVSLNCTLCFFHLQLQWFFLFRMPQI 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00989 421 SUPERFAMILY NAC domain 49 225 IPR036093 GO:0003677|GO:0006355
Viun1g00989 421 Gene3D NAC domain 73 230 IPR036093 GO:0003677|GO:0006355
Viun1g00989 421 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 318 IPR044799 GO:0003700
Viun1g00989 421 Pfam No apical meristem (NAM) protein 65 206 IPR003441 GO:0003677|GO:0006355
Viun1g00989 421 ProSiteProfiles NAC domain profile. 64 225 IPR003441 GO:0003677|GO:0006355
Viun1g00989 421 MobiDBLite consensus disorder prediction 228 268 - -
Viun1g00989 421 FunFam NAC domain-containing protein 8 73 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00989 Viun-Chr1 16807429 16811686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00989 42 227 NAC Transcription Factor Family AT4G28500 50.532 4.95e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g00989 NAM 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00989 - - gmx:100780442 548.51