Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00949 ATGGGTGTGAGCGAAAGTTTCAACAAGGATAATCATCATGAGTGTGTGGATGACGATGAAATTCCACTTCCTGGATTTCGATTCCACCCCACAGATGAAGAGCTTGTTAGTTTCTATCTACGAAGGAAGCTTGATAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGACATTTACAAATACGATCCTTGGGATCTTCCAAAAAGCAGTGGCAGTGGAGGAGAGAAGGAGGGTTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAATAGAGTGACTGGGTCTGGGTTTTGGAAAGCAACCGGCATAGACAAACCAGTGTACTCACAAGGTGGAGAAGGCAATGACTGCATTGGACTAAAAAAAACACTAGTCTATTACCGTGGCAGTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCATGAGTTTCGTCTTCCTTCTAACACAGACACCAACACAAGCTTTCCGAACTCCAGGAATTATGTAGATGTTCCCCAAGAAGCTGAAATTTGGACGTTGTGTAGAATTTTCAAGAGAAACGTGTCACAGAGGAAGCACGTGCCGGACTTGAAACAAGTATCTGCTAAGCGCCATGCATTTTATGACAAGAGCTCAAGAGAGAGCAATATGGAGTTTGACGGTGGTAACAAAGAATCGTATATAAATTTTGGTGGCCACTATCACAACGAGCAGAAGCCCGCCATCAACTATACAAACAGTGATAAAAGGAATCAGTTTAATGTGGTTAGTCAGTTGTGCTCTACAGTGGCACAGCAGCAACCTCAACTTACTGCACCAGCTCCTAACCTTTGGACCAACCTACCTGGGAACGATTTTTTCACATTCGATAACTGGGATGAACTTGGATCGGTAGTGAAGTTTGCTGTTGATTCGCCTAGCTTGTAG 927 0.4401 MGVSESFNKDNHHECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKSSGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTSFPNSRNYVDVPQEAEIWTLCRIFKRNVSQRKHVPDLKQVSAKRHAFYDKSSRESNMEFDGGNKESYINFGGHYHNEQKPAINYTNSDKRNQFNVVSQLCSTVAQQQPQLTAPAPNLWTNLPGNDFFTFDNWDELGSVVKFAVDSPSL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00949 308 FunFam NAC domain-containing protein 35 31 189 - -
Viun1g00949 308 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Viun1g00949 308 ProSiteProfiles NAC domain profile. 22 186 IPR003441 GO:0003677|GO:0006355
Viun1g00949 308 SUPERFAMILY NAC domain 23 186 IPR036093 GO:0003677|GO:0006355
Viun1g00949 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 242 - -
Viun1g00949 308 Gene3D NAC domain 31 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00949 Viun-Chr1 13654525 13656167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00949 19 195 NAC Transcription Factor Family AT5G39820 58.421 5.78e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g00949 NAM 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00949 - - gmx:100790471 534.258