Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00948 ATGTTAATTTTAGTGGGGAACAAACAGGGAACAATGAGTTCCCTTGCTTCTCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCTCTGGAAGGTCTCATTCTGTGGTGAAGAGGGTCTCTTTTTCCAGAGGGAATTGTAAGGGGAGAAAGAGATGGCATTGTTTATCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTATTGCTGACCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTAGTAAGGGTGGAGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCAAGGCCTGTGTTAAAGTCACCAGAGAATAAGGGTGACTCCATTTTGGGGCCCTCAAGGACTGCTCGGGATCCTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCACTTGGGGAGGTGTTAGAGAAGGCGGAAAAGCTGGGGAGTTCCAAGGTGAATGGTGATAAGAATAATGGTTCAGTGAACAAACCAATAAGGAATAATGCTGGTGCTAGTCCTAAGGCTGAGAAACCGGTGAATTCAGCAGCATCTCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGATACTGTTGCATCGGTGCAGAAGGTTGTGAAGGAAGTACCAAAGCTTAATTATAACAAGAATGAAGAGGATAAGTCTCAAACTAGAGGAGGGGAGAAGGTGGTTTCTCAAACTCGTGCTCCTCAACCACCTTTGAAACCTCAATTGCCTTCAAAACCTCAACCACCTTCAAAACCTCAACCTGCGTTACTATCTAAACCTTCTATAGCTCCCCCACCTGTCAAAAAACCTGTTGTCTTGAGGGACAAAGGGGCAGCTGAAACATCAGTTAAATCCAAAGAAAAGAAGTCACCCATCTTAATTGACAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCTCTAATTGCGCAAGCAGTTCTAGCACCCCCAAAACCAGGGAAGGCACCTTCCCCTGGGAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTCTGGCTGGGGGAGGACGAAGAAGACGAATTTTGGATGATGACGATGATGCTGATGTGATTCATGAGGCATCAGAGCTTGATGTCTCTATTCCTGGTGCCGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCACGACTCCAGGCTGCTAGGGATGCAGCTCCTGTCAAAGTAGAAATTCTGGAGGTTGGAGACAGTGGTATGCTGGTGGAGGAATTGGCCTACTGTTTGGCAACCAGTGAAGGTGAAATCCTTGGTTATCTATACTCCAAGGGGATTAAACCAGATGGGGTACAAACACTTGACAAAGATATGGTAAAGATGATTTGTAAGGAGTATGATGTTGAAGTCATAGATGCAGACCCGGTCAAAGTTGAAGGCTTAGTGAAGAAAAGAGAAATTCTTGATGAAGATGACCTCGATAAACTCAAAGATAGGCCTCCTGTTATTACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCCGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCCTATAAAGTGGAAGTACCTGTTGACGGCAAAAAGTTGCCCTGTGTTTTCCTTGACACTCCTGGACATGAGGCATTTGGAGCTATGAGAGCACGTGGAGCAAGTGTAACAGACATTGCTATTATTGTTGTGGCTGCCGATGATGGGATTCGTCCTCAAACAAATGAAGCTATTGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCTATTAACAAGATAGATAAAGACGGAGCAAATCCAGAACGAGTCATGCAGGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTAGCACCCCAATGGTTCCGATAAGTGCTCTTAAAGGAAAGAATGTAGATGATCTCTTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATCGAGGCAGGGCTAGATAAATCAAAGGGACCATTTGCTACATTTATTGTGCAGAATGGCTCTCTTAGACGGGGTGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGTGTTGATGAAGCTACACCTTCTGTACCTGTACAGGTTATTGGATTGAATAATGTTCCTATTGCCGGTGATGAATTTGAGGTTGTTCAATCCCTTGATGCTGCACGTGAAAGGGCTGAGGCTCGTGCCGAGTCATTGCGAAATGAGCGCATTTCAGCAAAGGCAGGAGATGGCAAAGTCACCCTTTCTTCCTTAGCTTCAGCAGTTTCCTCAGGAAAGCTGTCTGGACTTGACTTGCATCAATTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTAAGAAAAGCTCTGCAGGTGCTGCCACAAGACAATGTTACATTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAGCACTAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTGTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGCAGATAACAAAGCGGTTGAGATTAGATTATACAGAGTTATTTATGAATTAATTGATGACATACGAAATGCAATGGAAGGGCTCCTAGAACCAGTTGAGGAACAAGTAATGATTGGTTCAGCAGTAGTACGAGCTGTATTCAGCAGCGGTAGTGGTCGTGTTGCTGGATGCATGGTTACTGAGGGAAAGGTGCTAAAAGATTGTGGTATTCGAGTCAAGCGGAAGGGAAAAGTAGTTCATGTTGGTATAATTGATTCTTTGAGACGAGTGAAAGAAATTGTTAAGGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTGGAAGACTTTGATGACTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACAATTGAGAAGAAGAGAACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCATTGTAG 3063 0.444 MLILVGNKQGTMSSLASPVSLGSLMGVSSSGRSHSVVKRVSFSRGNCKGRKRWHCLSLSVCRYSVTTTDFIADQGNSVSLDSNSSSKGGDDGAGFVLKPPPRPVLKSPENKGDSILGPSRTARDPGDVEERNKVIESLGEVLEKAEKLGSSKVNGDKNNGSVNKPIRNNAGASPKAEKPVNSAASQKSKTLKSVWRKGDTVASVQKVVKEVPKLNYNKNEEDKSQTRGGEKVVSQTRAPQPPLKPQLPSKPQPPSKPQPALLSKPSIAPPPVKKPVVLRDKGAAETSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPSPGKFKDDFRKKGALAGGGRRRRILDDDDDADVIHEASELDVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDSGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTLDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGSTPMVPISALKGKNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGSLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSVPVQVIGLNNVPIAGDEFEVVQSLDAARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIIVGFNVKAPGSVKSYADNKAVEIRLYRVIYELIDDIRNAMEGLLEPVEEQVMIGSAVVRAVFSSGSGRVAGCMVTEGKVLKDCGIRVKRKGKVVHVGIIDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEAFNTIEKKRTLEEASASMAAAVEGVGVAL 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00948 1020 ProSitePatterns Initiation factor 2 signature. 953 975 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Viun1g00948 1020 CDD IF2_eIF5B 494 660 - -
Viun1g00948 1020 MobiDBLite consensus disorder prediction 319 340 - -
Viun1g00948 1020 Gene3D - 488 666 IPR027417 -
Viun1g00948 1020 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 491 664 IPR000795 GO:0003924|GO:0005525
Viun1g00948 1020 MobiDBLite consensus disorder prediction 146 301 - -
Viun1g00948 1020 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 182 1008 IPR015760 -
Viun1g00948 1020 Gene3D Translation factors 667 783 - -
Viun1g00948 1020 FunFam Translation initiation factor IF-2 799 904 - -
Viun1g00948 1020 Hamap Translation initiation factor IF-2 [infB]. 8 1000 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Viun1g00948 1020 PRINTS GTP-binding elongation factor signature 599 608 IPR000795 GO:0003924|GO:0005525
Viun1g00948 1020 PRINTS GTP-binding elongation factor signature 547 557 IPR000795 GO:0003924|GO:0005525
Viun1g00948 1020 PRINTS GTP-binding elongation factor signature 495 508 IPR000795 GO:0003924|GO:0005525
Viun1g00948 1020 PRINTS GTP-binding elongation factor signature 563 574 IPR000795 GO:0003924|GO:0005525
Viun1g00948 1020 SUPERFAMILY Translation proteins 905 1000 IPR009000 -
Viun1g00948 1020 MobiDBLite consensus disorder prediction 75 89 - -
Viun1g00948 1020 MobiDBLite consensus disorder prediction 213 228 - -
Viun1g00948 1020 FunFam Translation initiation factor IF-2 488 666 - -
Viun1g00948 1020 CDD IF2_mtIF2_II 671 752 IPR044145 -
Viun1g00948 1020 Pfam Elongation factor Tu GTP binding domain 496 656 IPR000795 GO:0003924|GO:0005525
Viun1g00948 1020 Pfam Translation-initiation factor 2 799 892 IPR023115 -
Viun1g00948 1020 MobiDBLite consensus disorder prediction 241 272 - -
Viun1g00948 1020 FunFam Translation initiation factor IF-2 904 1001 - -
Viun1g00948 1020 SUPERFAMILY Translation proteins 667 750 IPR009000 -
Viun1g00948 1020 FunFam Translation initiation factor IF-2 667 785 - -
Viun1g00948 1020 CDD mtIF2_IVc 910 992 - -
Viun1g00948 1020 MobiDBLite consensus disorder prediction 278 300 - -
Viun1g00948 1020 NCBIfam small GTP-binding protein domain 493 654 IPR005225 GO:0005525
Viun1g00948 1020 Coils Coil 750 777 - -
Viun1g00948 1020 NCBIfam translation initiation factor IF-2 414 1002 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Viun1g00948 1020 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 798 910 IPR036925 -
Viun1g00948 1020 Gene3D - 799 904 IPR036925 -
Viun1g00948 1020 MobiDBLite consensus disorder prediction 152 168 - -
Viun1g00948 1020 MobiDBLite consensus disorder prediction 75 130 - -
Viun1g00948 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 667 IPR027417 -
Viun1g00948 1020 Gene3D Translation factors 905 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00948 Viun-Chr1 13510579 13522077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00948 470 890 Eukaryotic Initiation Factors Gene Family AT1G76810 30.123 5.53e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00948 K02519 - gmx:100778924 1606.27