Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00943 ATGATGGCATTGGACTATAGTTTTCACTTCCTCAATGGGGTTTACGTGATGATGTTGTTTTGCGTTGGCATTGTACTTGTGAATTCGGTTAATGAAGAGGGGTCAAGTCTCTTGATGTTCAAAGCTTCCCTTCATGACCCAAACAACAATCTCTATAACTGGAATTCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTGTATTGCACGGGTTCAGTGGTAACTTGTGTGAAACTTTACCATCTTAATCTATCTGGTACTTTGGCTCCCACCATCTGCAATCTTCCAAAGCTGCTCGAGTTGAATTTGTCAAAAAATTTCATCTCTGGCCCCATTCCTGATGGTTTTGTTGAGTGTGGTAGTTTGGAGGTTTTGGACCTTTGCACAAATAGGCTTCATGGACCCCTTCTGACCCCTATTTGGAAAATCAGAACACTTAAAAAGCTCTATCTGTGTGAAAACTATATGTATGATGAAGTGCTGGAGGAGCTTGGGAATTTGGTATCACTTGAGGAGCTAGTTATCTATAGCAATAATTTAACTGGGAGAATTCCCTCTTCAATAAGAAAGTTGAAGCAGCTTAGAGTTATAAGGGCCGGTCTGAATGCCCTCTCAGGACCAATACCTACTGAAATCAGTGAATGTGAGAGCTTGGAGATATTGGGGTTGGCACAGAATCAACTAGAAGGTTCCATTCCAAGGGAGCTTCAAAAGCTTCGGAACCTCACTACTATACTTCTGTGGCAAAATTCTTTCTCTGGAGAGATTCCTCCTGAGATTGGAAACATTAGTAGCTTGGAATTGCTTGCTTTGCACCAAAATTTACTAACTGGTGGTGTCCCCAAGGAACTGGGAAAGCTGTCCCAGTTGAAGAGGTTGTACATGTACACCAACATGCTGAACGGAACAATTCCACCTGAGCTAGGAAACTGCACAAAGGCTATTGAGATAGACCTATCTGAAAATCATTTGATTGGGATCATTCCCAAGGAGCTGGGCCTAATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAACCTACAGGGTCATATTCCAAGGGAGCTCGGTCAGTTAAGGGTGCTAAGAAATTTAGACCTGTCACTAAATAACTTGACTGGTACAATTCCACTGGAGTTTGAAAACCTTACACACATGGAAGATTTGCAGCTATTTGACAATCAACTTGAAGGTGTGATTCCTCCTCGGCTTGGAGCTATTAGGAACCTTACTATTCTTGATATATCTGCAAACAACCTTTTTGGTATGATACCTCTTCATCTTTGTGCATATCAGAAGCTACAATTCCTGAGCCTTGGGTCAAATAGGTTGTTTGGAAATATTCCTCATAGCCTGAAAACATGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCAGCTGACAGGAAGCCTGCCTGTTGAATTGTATGAACTTCACAATCTCACTGCTCTGGAACTCTATCAGAATCGATTTTCTGGGATGATAAACCCCGGGATAGGTCAACTCAGGAATCTAGAGAGGCTTCTCTTGTCAGATAACTACTTTGAAGGCTATCTCCCGCCTGAGATTGGAAGTTTGAAACAACTTGTCACATTCAATGTTTCCTCTAACCGTTTCAGTGGAAGTATTCCTCAAGAGTTGGGAAACTGTGTTAGAATGCAGAGGCTTGATCTTAGCAGGAACCACTTCACTGGTATGCTTCCAAATGAAATTGGCAGCCTGGTGAACTTGGAACTGTTAAAAGTTTCTGATAACGTGCTCTCAGGAGAAATACCAGGCACTTTGGGGAATCTTATTCGGCTCACAGACCTGGAACTAGGTGGCAACCAGTTTTCAGGAAGCATCTCTATTCATTTGGGAAGACTTGCAGCCCTTCAGATTGCTCTTAACCTGAGCCACAACAAACTTTCTGGCTCAATTCCTGATAGTCTTGGTAACTTACAAATGCTAGAGTCCCTTTATCTCAATGACAATCAACTTGTTGGTGAGATTCCAGCATCAATTGGTGACCTTCTCAGTCTTGTAGTGTGCAATGTATCTAACAACAAGCTAGTAGGAACTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCACGAACTTTGCTGGGAACAACGGTTTGTGCCGTGTCGGTACCAGTCATTGCCATCCATCTATATCTTCCTCTCATGCTGCGAAACAAAGCTGGATCAGAAATGGTTCCTCGAGGGAAAAAATAGTCAGCATTGTTTCTGGGGTTGTTGGACTAGTTTCTCTTATTTTCATAGTGTGGATATGTTTGGCTATGAGGCGCCGTGGCCATGATGCTTTTGTTTCACTTGAAGGGCAAACTAACACTCATGTCTTGGATAACTACTACTTTCCCAAAGAAGGGTTTACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAAAGGCAGTTCTAGGAAGAGGAGCTTGTGGCACTGTGTTCAAGGCAATTATGAATGACGGTGAAGTGATTGCTGTAAAGAAGCTGAATTCGCGAGGACAAGGAGCAAATAGTGTTGACCAAAGCTTCCTTGCCGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTCCTATATGAATACATGGAAAATGGAAGCCTTGGTGAACAACTTCATTCAAGTGCAATCACTTGTGCACTGGATTGGAGTAGTCGATATAAAATTGCTCTTGGAGCAGCACAAGGCTTATGCTATCTTCATTATGATTGCAAACCTCAAATCATTCACCGTGACATTAAGTCTAACAACATATTACTTGACGAGGTGTTTCAGGCTCACGTTGGAGATTTTGGCTTGGCAAAGTTGATTGATTTTTCTTTCTCAAAATCCATGTCTGCTGTGGCCGGTTCCTATGGCTACATTGCCCCAGAATACGCTTACACGATGAAGGTGACTGAAAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTTGAACTAGTTACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGACCTAGTCACCTGTGTGAGAAGAGCAATTCAAGCATCAGTACCAACCTCTGAATTATTTGACAAGAGATTGAATCTTAGTGCTCCAAAGATAGTTGAGGAAATGTCTCTTATTCTCAAAATTGCCCTGTTCTGTACCAGCACATCTCCACTTAACAGGCCCACTATGAGAGAGGTCATTGCAATGTTGATTGATGCTAGGGAATATGTCAGCAACTCACCAACCTCTCCTACATCAGAATCTCCATTGGATTAG 3306 0.4235 MMALDYSFHFLNGVYVMMLFCVGIVLVNSVNEEGSSLLMFKASLHDPNNNLYNWNSSDLTPCNWTGVYCTGSVVTCVKLYHLNLSGTLAPTICNLPKLLELNLSKNFISGPIPDGFVECGSLEVLDLCTNRLHGPLLTPIWKIRTLKKLYLCENYMYDEVLEELGNLVSLEELVIYSNNLTGRIPSSIRKLKQLRVIRAGLNALSGPIPTEISECESLEILGLAQNQLEGSIPRELQKLRNLTTILLWQNSFSGEIPPEIGNISSLELLALHQNLLTGGVPKELGKLSQLKRLYMYTNMLNGTIPPELGNCTKAIEIDLSENHLIGIIPKELGLISNLSLLHLFENNLQGHIPRELGQLRVLRNLDLSLNNLTGTIPLEFENLTHMEDLQLFDNQLEGVIPPRLGAIRNLTILDISANNLFGMIPLHLCAYQKLQFLSLGSNRLFGNIPHSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNRFSGMINPGIGQLRNLERLLLSDNYFEGYLPPEIGSLKQLVTFNVSSNRFSGSIPQELGNCVRMQRLDLSRNHFTGMLPNEIGSLVNLELLKVSDNVLSGEIPGTLGNLIRLTDLELGGNQFSGSISIHLGRLAALQIALNLSHNKLSGSIPDSLGNLQMLESLYLNDNQLVGEIPASIGDLLSLVVCNVSNNKLVGTVPDTTTFRKMDFTNFAGNNGLCRVGTSHCHPSISSSHAAKQSWIRNGSSREKIVSIVSGVVGLVSLIFIVWICLAMRRRGHDAFVSLEGQTNTHVLDNYYFPKEGFTYQDLLEATGNFSEKAVLGRGACGTVFKAIMNDGEVIAVKKLNSRGQGANSVDQSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSAITCALDWSSRYKIALGAAQGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSFSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAPKIVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPTSPTSESPLD 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00943 1101 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 415 721 - -
Viun1g00943 1101 FunFam Nuclear pore complex protein NUP107 30 182 - -
Viun1g00943 1101 SMART LRR_typ_2 95 119 IPR003591 -
Viun1g00943 1101 SMART LRR_typ_2 287 311 IPR003591 -
Viun1g00943 1101 SMART LRR_typ_2 383 407 IPR003591 -
Viun1g00943 1101 SMART LRR_typ_2 575 599 IPR003591 -
Viun1g00943 1101 SMART LRR_typ_2 359 382 IPR003591 -
Viun1g00943 1101 SMART LRR_typ_2 167 191 IPR003591 -
Viun1g00943 1101 SMART LRR_typ_2 648 672 IPR003591 -
Viun1g00943 1101 SMART LRR_typ_2 503 527 IPR003591 -
Viun1g00943 1101 Gene3D Phosphorylase Kinase; domain 1 772 884 - -
Viun1g00943 1101 ProSiteProfiles Protein kinase domain profile. 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00943 1101 Gene3D Transferase(Phosphotransferase) domain 1 885 1094 - -
Viun1g00943 1101 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 281 383 - -
Viun1g00943 1101 SUPERFAMILY Protein kinase-like (PK-like) 781 1080 IPR011009 -
Viun1g00943 1101 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 331 1081 - -
Viun1g00943 1101 Gene3D Ribonuclease Inhibitor 142 213 IPR032675 -
Viun1g00943 1101 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Viun1g00943 1101 SMART serkin_6 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00943 1101 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 183 280 - -
Viun1g00943 1101 SUPERFAMILY RNI-like 365 688 - -
Viun1g00943 1101 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Viun1g00943 1101 Pfam Protein kinase domain 807 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00943 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Viun1g00943 1101 Gene3D Ribonuclease Inhibitor 292 382 IPR032675 -
Viun1g00943 1101 Gene3D Ribonuclease Inhibitor 384 725 IPR032675 -
Viun1g00943 1101 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 885 1097 - -
Viun1g00943 1101 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 884 - -
Viun1g00943 1101 Gene3D Ribonuclease Inhibitor 214 291 IPR032675 -
Viun1g00943 1101 SUPERFAMILY L domain-like 33 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00943 Viun-Chr1 13335413 13340565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00943 52 1084 Receptor kinase-like Gene Family AT1G73080 37.430 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun1g00943 Pkinase 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00943 - - gmx:100818311 1965.66