Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00938 ATGGAAGAACCTACATTATTGTTCCCAGACACAGACCTGGATCTCAGTTTTACCAGCACCACCACCGATCGCACCAGCGCCCGAACCAGCCTCGCCCGAACCAGCAGCCTCACACTCAGCTTCAACGATCGTATCTCAACTAGCGGGCCCTCTATCTCAGTCGTAAACCGTCGCCCCCACCGGAGCTCCGACCCCCACTGGTCCGCCATCCAGGCAGCCACCATGCTCTCCTCCGATGGCCGTCTCCACCTCCGCCATCTTAAGCTGCTCCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTCTTCCTCTGCCGCCTGCGCGACTACGACGGCGCCAACTTCGCCCTCAAAGTCGTCGACAAAGACCTCCTCACCCCCAAAAAACTCTCCCACGCGGAAACCGAGGCCGAAATCCTCCAAGCACTCGACCATCCCTTCCTCCCCACGCTCTACGCCCGCATCGACGTCTCCCACTACACGTGCCTGCTCATCGACTACTGCCCCGCCGGCGACCTCCACTCCCTCCTCCGCAAACAGCCACAGCACCGCCTTCCCCTCTCGGTAGCGCGTTTCTTCGCCGCCGAGGTCCTCGTCGCCCTCGAGTATCTCCACGCGCTCGGAATCGTCTACCGCGACCTCAAACCGGAGAACGTTCTCCTGCGCGAAGACGGCCATGTCATGCTCTCGGATTTCGATCTCTGCTTCAAATCCGACGTGGCACCCAGTCTCACACTCCGGACCCACAACAAACCTCCTCGCGTGGACCCCACCAACGGTTGTTTCAGTTGTAACCGTCTCCCCTCCAGACAACACCACCAAACGTTCCTTGCGGAGTTCATTGCGGAACCCGTGGCGGCATTTTCACGGTCGTGCGTCGGGACGCACGAGTACCTCGCCCCTGAGCTCGTTTCGGGTAACGGTCACGGTAACGGCGTGGACTGGTGGGCTTTTGGAGTTTTCGTCTACGAGTTGCTGTACGGGACGACACCGTTTAAGGGATGCAACAAAGAGACCACACTGCGCAATATAGCGTCGTGTAAGGACGTGAGGTTCGTCCAGTTGTCGGAAGGAGAAGAGCCTGGGATGGCTGAGGCTAGGGATTTGATTGAGAAGTTGTTGGTGAAGGATCCAAGGAGGAGGCTAGGGTGCGCCAAGGGTGCCACTGATGTTAAACGACACCCGTTTTTTGACGGCATTAAGTGGCCCTTGATTCGAACTTACCGGCCACCGGAAGTGAAGGGGTTGGTGAGAAGGAACAGGTCGCACGTGAGTGGTCACGTGAGTTGCAGGAGGAAGAGGTGGTCGTGGAAGAAACTTTCTCATGTCCTTCGGAAATGTAATTTGATTTCAAACTATAGTAATAATAATAACAATTATTATCACTATGTTGATAGTTATAAGGTTAATTAG 1410 0.5674 MEEPTLLFPDTDLDLSFTSTTTDRTSARTSLARTSSLTLSFNDRISTSGPSISVVNRRPHRSSDPHWSAIQAATMLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGANFALKVVDKDLLTPKKLSHAETEAEILQALDHPFLPTLYARIDVSHYTCLLIDYCPAGDLHSLLRKQPQHRLPLSVARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSLTLRTHNKPPRVDPTNGCFSCNRLPSRQHHQTFLAEFIAEPVAAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFVYELLYGTTPFKGCNKETTLRNIASCKDVRFVQLSEGEEPGMAEARDLIEKLLVKDPRRRLGCAKGATDVKRHPFFDGIKWPLIRTYRPPEVKGLVRRNRSHVSGHVSCRRKRWSWKKLSHVLRKCNLISNYSNNNNNYYHYVDSYKVN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00938 469 Gene3D Transferase(Phosphotransferase) domain 1 289 410 - -
Viun1g00938 469 Pfam Protein kinase domain 89 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00938 469 SUPERFAMILY Protein kinase-like (PK-like) 62 416 IPR011009 -
Viun1g00938 469 Gene3D Transferase(Phosphotransferase) domain 1 171 237 - -
Viun1g00938 469 Gene3D Phosphorylase Kinase; domain 1 86 170 - -
Viun1g00938 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Viun1g00938 469 SMART serkin_6 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00938 469 FunFam Serine/threonine-protein kinase OXI1 171 238 - -
Viun1g00938 469 FunFam Serine/threonine-protein kinase OXI1 286 414 - -
Viun1g00938 469 ProSiteProfiles Protein kinase domain profile. 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00938 469 PANTHER FLIPPASE KINASE 1-RELATED 30 414 - -
Viun1g00938 469 CDD STKc_phototropin_like 94 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00938 Viun-Chr1 13169471 13171141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00938 1 463 AGC Kinase Gene Family AT3G14370 65.900 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun1g00938 Pkinase 1.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00938 - - gmx:100778383 686.411