Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00928 ATGACTTGTTTTCCTTTACTTTTCAGTAAGTCATCTTCTTCAGCAAGAAAAGATCCAGAAATTGATGAAGGCATTCATAATGTTAAACTATACTCCTACAAAGAATTAAGAAATGCCACTGATGACTTCAGTCAAGCCAATAAAATCGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGACTTAAAGACGGAAAAGTTGCTGCAATAAAAGTTCTTGCAGCAGAATCAAGACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTAATCTCAGAGATAGAGCATGAAAATTTGGTCAAGCTATATGGTTGCAGTGTGGACAAAAATAGCAGAATATTAGTCTACAATTACCTTGAGAATAATAGTCTGTCACAAACTCTTCTAGGTGGAAGTCACAGTAAAATGTACTTTGATTGGCGAACAAGATGCAAAATAAGCGTTGGTATTGCTCGTGGACTGGCCTATCTTCATGAAGAAGTAAGGCCTCATATTGTTCACAGGGATATAAAAGCAAGCAACATCCTACTTGATAAAGATCTTACACCCAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACTCGAGTAGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATAGGGGGGAAGCTAACACGGAAAGCAGATGTTTACAGCTTTGGTGTCCTCCTTGTGGAAATAATAAGTGGAAGATGTAACACAAACACGCGATTACCAGTAGAAGAACAATTTCTTCTAGAGAGGACTTGGGAACTTTATGAGAGAAAGGAATTGGTGGGACTGGTAGATACATCGCTGGACGGGGAATTCGATGCCGAGCAGGCTTGTAAGTTTATGAAGATTGGTCTTCTTTGCACCCAGGAATCACCTAAGCTCCGGCCATCCATGTCTTCTGTGGTGAAGATGCTCACTGGAAATATGGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTAAGAAGTAACAAAGAAAGTAGTAGTTATGTGAAGAATTCATCTACCTACAATACATCCTCTTCTTCGGACAACCATGACACTACCATGTCATCTGTCACAACTACAACTTTTGCTGCAGTATATGATGAAACCATGTGA 1155 0.3965 MTCFPLLFSKSSSSARKDPEIDEGIHNVKLYSYKELRNATDDFSQANKIGEGGFGSVYKGRLKDGKVAAIKVLAAESRQGVKEFLTEINVISEIEHENLVKLYGCSVDKNSRILVYNYLENNSLSQTLLGGSHSKMYFDWRTRCKISVGIARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIISGRCNTNTRLPVEEQFLLERTWELYERKELVGLVDTSLDGEFDAEQACKFMKIGLLCTQESPKLRPSMSSVVKMLTGNMDVDDSKITKPALISDFMDLKVRSNKESSSYVKNSSTYNTSSSSDNHDTTMSSVTTTTFAAVYDETM 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00928 384 FunFam cold-responsive protein kinase 1 119 330 - -
Viun1g00928 384 SUPERFAMILY Protein kinase-like (PK-like) 25 335 IPR011009 -
Viun1g00928 384 CDD STKc_IRAK 49 316 - -
Viun1g00928 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Viun1g00928 384 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Viun1g00928 384 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00928 384 FunFam cold-responsive protein kinase 1 14 118 - -
Viun1g00928 384 Gene3D Transferase(Phosphotransferase) domain 1 119 330 - -
Viun1g00928 384 Pfam Protein kinase domain 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00928 384 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 359 - -
Viun1g00928 384 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Viun1g00928 384 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00928 384 MobiDBLite consensus disorder prediction 348 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00928 Viun-Chr1 12856284 12860430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00928 31 362 Receptor kinase-like Gene Family AT1G53430 50.588 2.00e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g00928 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00928 - - gmx:100782320 654.825